Basic Information:

  VIRBase ID:  

VHID00681222

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          DERA:  NM_015954     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	DERA
miRBase Accession/Entrez ID	MIMAT0010151	51071
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	CGI-26//DEOC

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DERA	chr12:16173239(+) A-I      intronic chr12:16114777(+) A-I      intronic chr12:16114850(+) A-I      intronic chr12:16114861(+) A-I      intronic chr12:16114875(+) A-I      intronic chr12:16114878(+) A-I      intronic chr12:16119212(+) A-I      intronic chr12:16119330(+) A-I      intronic chr12:16119347(+) A-I      intronic chr12:16119211(+) A-I      intronic chr12:16087357(+) A-I      intronic chr12:16169509(+) A-I      intronic chr12:16169543(+) A-I      intronic chr12:16114843(+) A-I      intronic chr12:16169632(+) A-I      intronic chr12:16087358(+) A-I      intronic chr12:16087370(+) A-I      intronic chr12:16176433(+) A-I      intronic chr12:16093548(+) A-I      intronic chr12:16087373(+) A-I      intronic chr12:16182983(+) A-I      intronic chr12:16088300(+) A-I      intronic chr12:16183002(+) A-I      intronic chr12:16085496(+) A-I      intronic chr12:16090028(+) A-I      intronic chr12:16068438(+) A-I      intronic chr12:16073591(+) A-I      intronic chr12:16087265(+) A-I      intronic chr12:16087259(+) A-I      intronic chr12:16090055(+) A-I      intronic chr12:16090056(+) A-I      intronic chr12:16090111(+) A-I      intronic chr12:16090112(+) A-I      intronic chr12:16090125(+) A-I      intronic chr12:16090158(+) A-I      intronic chr12:16093412(+) A-I      intronic chr12:16093476(+) A-I      intronic chr12:16182950(+) A-I      intronic chr12:16067059(+) A-I      intronic chr12:16113503(+) A-I      intronic chr12:16093387(+) A-I      intronic chr12:16114701(+) A-I      intronic chr12:16067096(+) A-I      intronic chr12:16182986(+) A-I      intronic chr12:16113317(+) A-I      intronic chr12:16134270(+) A-I      intronic chr12:16182996(+) A-I      intronic chr12:16079653(+) A-I      intronic chr12:16067213(+) A-I      intronic chr12:16078855(+) A-I      intronic chr12:16169633(+) A-I      intronic chr12:16087399(+) A-I      intronic chr12:16088222(+) A-I      intronic chr12:16114892(+) A-I      intronic chr12:16154154(+) A-I      intronic chr12:16114403(+) A-I      intronic chr12:16114778(+) A-I      intronic chr12:16114924(+) A-I      intronic chr12:16158145(+) A-I      intronic chr12:16067236(+) A-I      intronic chr12:16172919(+) A-I      intronic chr12:16093497(+) A-I      intronic chr12:16173264(+) A-I      intronic chr12:16146112(+) A-I      intronic chr12:16067895(+) A-I      intronic chr12:16169478(+) A-I      intronic chr12:16113452(+) A-I      intronic chr12:16067151(+) A-I      intronic chr12:16119055(+) A-I      intronic chr12:16183140(+) A-I      intronic chr12:16154116(+) A-I      intronic chr12:16183128(+) A-I      intronic chr12:16169479(+) A-I      intronic chr12:16169615(+) A-I      intronic chr12:16113314(+) A-I      intronic chr12:16068491(+) A-I      intronic chr12:16158100(+) A-I      intronic chr12:16093438(+) A-I      intronic chr12:16068457(+) A-I      intronic chr12:16172741(+) A-I      intronic chr12:16079635(+) A-I      intronic chr12:16078841(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	DERA	chr12:16154116(+) A-G intron -    22484847 chr12:16154154(+) A-G intron -    22484847 chr12:16067151(+) A-G intron -    22484847 chr12:16068457(+) A-G intron -    22484847 chr12:16078841(+) A-G intron -    22484847 chr12:16078855(+) A-G intron -    22484847 chr12:16087399(+) A-G intron -    22484847 chr12:16093387(+) A-G intron -    22484847 chr12:16093497(+) A-G intron -    22484847 chr12:16114701(+) A-G intron -    22484847 chr12:16114778(+) A-G intron -    22484847 chr12:16119055(+) A-G intron -    22484847 chr12:16119226(+) T-C intron -    22484847 chr12:16119322(+) T-C intron -    22484847 chr12:16158317(+) C-T intron -    22484847 chr12:16160122(+) T-G intron -    22484847 chr12:16160123(+) G-T intron -    22484847 chr12:16160124(+) T-G intron -    22484847 chr12:16182986(+) A-G intron -    22484847 chr12:16182996(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DERA	chr12:16064639-16064640(+) m6A CDS//intron       24981863 chr12:16064656-16064657(+) m6A CDS//intron       24981863 chr12:16064661-16064662(+) m6A CDS//intron       24981863 chr12:16064668-16064669(+) m6A CDS//intron       24981863 chr12:16189813-16189814(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr12:16189836-16189837(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr12:16189933-16189934(+) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085 chr12:16189991-16189992(+) m6A 3'UTR       24284625//26404942//27773535//22608085 chr12:16190001-16190002(+) m6A 3'UTR       24284625//26404942//27773535//22608085 chr12:16190106-16190107(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DERA	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: DERA

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg