Basic Information:

  VIRBase ID:  

VHID00681131

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          SGSM3:  NR_146412     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	SGSM3
miRBase Accession/Entrez ID	MIMAT0010151	27352
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	CIP85//MAP//RabGAP-5//RABGAP5//rabGAPLP//RUSC3//RUTBC3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SGSM3	chr22:40777842(+) A-I      intronic chr22:40777883(+) A-I      intronic chr22:40780739(+) A-I      intronic chr22:40777888(+) A-I      intronic chr22:40780673(+) A-I      intronic chr22:40777833(+) A-I      intronic chr22:40780686(+) A-I      intronic chr22:40780726(+) A-I      intronic chr22:40780729(+) A-I      intronic chr22:40798542(+) A-I      intronic chr22:40798548(+) A-I      intronic chr22:40780677(+) A-I      intronic chr22:40798549(+) A-I      intronic chr22:40798553(+) A-I      intronic chr22:40780737(+) A-I      intronic chr22:40776510(+) A-I      intronic chr22:40776500(+) A-I      intronic chr22:40776471(+) A-I      intronic chr22:40776470(+) A-I      intronic chr22:40776402(+) A-I      intronic chr22:40775958(+) A-I      intronic chr22:40775950(+) A-I      intronic chr22:40775949(+) A-I      intronic chr22:40775935(+) A-I      intronic chr22:40775825(+) A-I      intronic chr22:40775817(+) A-I      intronic chr22:40775816(+) A-I      intronic chr22:40775813(+) A-I      intronic chr22:40775793(+) A-I      intronic chr22:40775783(+) A-I      intronic chr22:40775776(+) A-I      intronic chr22:40774590(+) A-I      intronic chr22:40774580(+) A-I      intronic chr22:40774486(+) A-I      intronic chr22:40774333(+) A-I      intronic chr22:40774326(+) A-I      intronic chr22:40774316(+) A-I      intronic chr22:40774252(+) A-I      intronic chr22:40774225(+) A-I      intronic chr22:40773784(+) A-I      intronic chr22:40773590(+) A-I      intronic chr22:40773585(+) A-I      intronic chr22:40771970(+) A-I      intronic chr22:40771965(+) A-I      intronic chr22:40771952(+) A-I      intronic chr22:40771951(+) A-I      intronic chr22:40771938(+) A-I      intronic chr22:40771539(+) A-I      intronic chr22:40771437(+) A-I      intronic chr22:40771428(+) A-I      intronic chr22:40771426(+) A-I      intronic chr22:40771405(+) A-I      intronic chr22:40771398(+) A-I      intronic chr22:40770838(+) A-I      intronic chr22:40770773(+) A-I      intronic chr22:40770769(+) A-I      intronic chr22:40770715(+) A-I      intronic chr22:40770700(+) A-I      intronic chr22:40770685(+) A-I      intronic chr22:40769777(+) A-I      intronic chr22:40769746(+) A-I      intronic chr22:40769723(+) A-I      intronic chr22:40771960(+) A-I      intronic chr22:40791606(+) A-I      intronic chr22:40787383(+) A-I      intronic chr22:40787378(+) A-I      intronic chr22:40781997(+) A-I      intronic chr22:40781995(+) A-I      intronic chr22:40781974(+) A-I      intronic chr22:40781886(+) A-I      intronic chr22:40780772(+) A-I      intronic chr22:40780004(+) A-I      intronic chr22:40779997(+) A-I      intronic chr22:40777948(+) A-I      intronic chr22:40777946(+) A-I      intronic chr22:40777913(+) A-I      intronic chr22:40777898(+) A-I      intronic chr22:40777872(+) A-I      intronic chr22:40777856(+) A-I      intronic chr22:40777757(+) A-I      intronic chr22:40776792(+) A-I      intronic chr22:40776761(+) A-I      intronic chr22:40776739(+) A-I      intronic chr22:40776738(+) A-I      intronic chr22:40776730(+) A-I      intronic chr22:40776678(+) A-I      intronic chr22:40777947(+) A-I      intronic chr22:40776711(+) A-I      intronic chr22:40796536(+) A-I      intronic chr22:40768337(+) A-I      intronic chr22:40777895(+) A-I      intronic chr22:40798588(+) A-I      intronic chr22:40776758(+) A-I      intronic chr22:40767978(+) A-I      intronic chr22:40769749(+) A-I      intronic chr22:40775744(+) A-I      intronic chr22:40790636(+) A-I      intronic chr22:40774538(+) A-I      intronic chr22:40768329(+) A-I      intronic chr22:40776734(+) A-I      intronic chr22:40770874(+) A-I      intronic chr22:40774617(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SGSM3	chr22:40797349(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SGSM3	chr22:40796714-40796715(+) m6A 5'UTR//exon       24981863 chr22:40796764-40796765(+) m6A 5'UTR//exon       24981863 chr22:40801722-40801723(+) m6A CDS//exon       24284625 chr22:40801769-40801770(+) m6A CDS//exon       24284625 chr22:40801821-40801822(+) m6A CDS//exon       24284625 chr22:40802135-40802136(+) m6A CDS//exon       22575960 chr22:40802162-40802163(+) m6A CDS//exon       22575960 chr22:40802466-40802467(+) m6A CDS//exon       22575960 chr22:40802619-40802620(+) m6A CDS//exon       - chr22:40802944-40802945(+) m6A exon//intron       24981863 chr22:40802991-40802992(+) m6A exon//intron       24981863//22575960 chr22:40803035-40803036(+) m6A CDS//exon       22575960 chr22:40803237-40803238(+) m6A CDS//exon       - chr22:40803253-40803254(+) m6A CDS//exon       - chr22:40803312-40803313(+) m6A CDS//exon       - chr22:40803321-40803322(+) m6A CDS//exon       - chr22:40803363-40803364(+) m6A exon//intron       - chr22:40803429-40803430(+) m6A CDS//exon       - chr22:40803456-40803457(+) m6A CDS//exon       - chr22:40803465-40803466(+) m6A CDS//exon       - chr22:40803516-40803517(+) m6A CDS//exon       - chr22:40803589-40803590(+) m6A exon//intron       - chr22:40803624-40803625(+) m6A exon//intron       - chr22:40804382-40804383(+) m1A CDS//exon       26863410 chr22:40805503-40805504(+) m6A CDS//exon       - chr22:40805576-40805577(+) m6A CDS//exon//intron       - chr22:40805603-40805604(+) m6A CDS//exon//intron       - chr22:40805632-40805633(+) m6A CDS//exon//intron       - chr22:40805716-40805717(+) m6A 3'UTR//CDS//exon       - chr22:40805812-40805813(+) m6A 3'UTR//exon       24284625 chr22:40806222-40806223(+) m6A 3'UTR       - chr22:40806231-40806232(+) m6A 3'UTR       - chr22:40806238-40806239(+) m6A 3'UTR       - chr22:40806268-40806269(+) m6A 3'UTR       - chr22:40806282-40806283(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SGSM3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: SGSM3

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg