Detail Information

Basic Information:


  VIRBase ID:  

VHID00680551

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:           TLR6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcpv-miR-P1-3p TLR6
miRBase
Accession/Entrez ID		 MIMAT0010151 10333
Organism Merkel cell polyomavirus Homo sapiens
Category miRNA mRNA
Alias - CD286

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TLR6
chr4:38846503(-) A-I      intronic
chr4:38846431(-) A-I      intronic
chr4:38842253(-) A-I      intronic
chr4:38842251(-) A-I      intronic
chr4:38846430(-) A-I      intronic
chr4:38842147(-) A-I      intronic
chr4:38826713(-) A-I      3'UTR
chr4:38826693(-) A-I      3'UTR
chr4:38826424(-) A-I      3'UTR
chr4:38826525(-) A-I      3'UTR
chr4:38826697(-) A-I      3'UTR
chr4:38826515(-) A-I      3'UTR
chr4:38826690(-) A-I      3'UTR
chr4:38826514(-) A-I      3'UTR
chr4:38847549(-) A-I      intronic
chr4:38847613(-) A-I      intronic
chr4:38847556(-) A-I      intronic
chr4:38846604(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TLR6
chr4:38826544(-) T-C exon 3'UTR    22484847
chr4:38826693(-) A-G exon 3'UTR    22484847
chr4:38826697(-) A-G exon 3'UTR    22484847
chr4:38826713(-) A-G exon 3'UTR    22484847
chr4:38826715(-) C-T exon 3'UTR    22484847
chr4:38842147(-) A-G intron -    22484847
chr4:38846604(-) A-G intron -    22484847
chr4:38847556(-) A-G intron -    22484847
chr4:38847631(-) A-G intron -    22484847
chr4:38847729(-) C-T intron -    22484847
chr4:38847734(-) C-T intron -    22484847
chr4:38856832(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TLR6
chr4:38825877-38825878(-) m6A 3'UTR       24981863
chr4:38825969-38825970(-) m6A 3'UTR       24981863
chr4:38826175-38826176(-) m6A 3'UTR       24981863//27773535
chr4:38826205-38826206(-) m6A 3'UTR       24981863//27773535
chr4:38826212-38826213(-) m6A 3'UTR       24981863//27773535
chr4:38826221-38826222(-) m6A 3'UTR       24981863//27773535
chr4:38826240-38826241(-) m6A 3'UTR       24981863//27773535
chr4:38826253-38826254(-) m6A 3'UTR       24981863//27773535
chr4:38826317-38826318(-) m6A 3'UTR       27773535
chr4:38826725-38826726(-) m6A 3'UTR       24209618//24981863//27773535
chr4:38826743-38826744(-) m6A 3'UTR       24209618//24981863//27773535
chr4:38826793-38826794(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38826902-38826903(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38826912-38826913(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38826994-38826995(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38827016-38827017(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38827022-38827023(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38827042-38827043(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38827158-38827159(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38827232-38827233(-) m6A 3'UTR       24284625//24981863//27773535
chr4:38827313-38827314(-) m6A 3'UTR       24284625//24981863//27773535
chr4:38827330-38827331(-) m6A 3'UTR       24284625//24981863//27773535
chr4:38827610-38827611(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38827618-38827619(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38827737-38827738(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38827777-38827778(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38827790-38827791(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38827869-38827870(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr4:38827907-38827908(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr4:38827930-38827931(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr4:38827945-38827946(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr4:38827972-38827973(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr4:38828023-38828024(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr4:38828061-38828062(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr4:38828116-38828117(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr4:38828157-38828158(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr4:38828369-38828370(-) m6A 3'UTR       24209618//24981863
chr4:38828477-38828478(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr4:38828521-38828522(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960
chr4:38828558-38828559(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960
chr4:38828577-38828578(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960
chr4:38828588-38828589(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960
chr4:38828675-38828676(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr4:38828722-38828723(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr4:38828819-38828820(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr4:38828869-38828870(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr4:38828883-38828884(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr4:38828949-38828950(-) m6A CDS       24284625//24209618//24981863//27773535//22575960
chr4:38829064-38829065(-) m6A CDS//intron       24284625//24981863
chr4:38829144-38829145(-) m6A CDS//intron       24284625//24981863
chr4:38829178-38829179(-) m6A CDS//intron       24981863
chr4:38829189-38829190(-) m6A CDS//intron       24981863
chr4:38829205-38829206(-) m6A CDS//intron       24981863
chr4:38829224-38829225(-) m6A CDS//intron       24981863
chr4:38829230-38829231(-) m6A CDS//intron       24981863
chr4:38829373-38829374(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr4:38829460-38829461(-) m6A CDS//intron       24284625//24981863//27773535
chr4:38829511-38829512(-) m6A CDS//intron       24284625//24981863//27773535
chr4:38829663-38829664(-) m6A CDS//intron       24981863
chr4:38829681-38829682(-) m6A CDS//intron       24981863
chr4:38829693-38829694(-) m6A CDS//intron       24981863
chr4:38829826-38829827(-) m6A CDS//intron       24981863//27773535
chr4:38829837-38829838(-) m6A CDS//intron       24981863//27773535
chr4:38829922-38829923(-) m6A CDS//intron       24981863//26404942//27773535//22608085
chr4:38829953-38829954(-) m6A CDS       24981863//26404942//22608085
chr4:38830018-38830019(-) m6A CDS       24981863//27773535
chr4:38830099-38830100(-) m6A CDS       24981863//27773535
chr4:38830130-38830131(-) m6A CDS       24981863//27773535
chr4:38830153-38830154(-) m6A CDS       24981863
chr4:38830164-38830165(-) m6A CDS       24981863
chr4:38830266-38830267(-) m6A CDS       24981863//27773535
chr4:38830362-38830363(-) m6A CDS       24284625//24981863
chr4:38830453-38830454(-) m6A CDS       24981863
chr4:38830502-38830503(-) m6A CDS       24981863
chr4:38830848-38830849(-) m6A CDS       24981863
chr4:38830909-38830910(-) m6A CDS       24981863//27773535
chr4:38830934-38830935(-) m6A CDS       24284625//24981863//27773535
chr4:38830948-38830949(-) m6A CDS       24284625//24981863//27773535
chr4:38830984-38830985(-) m6A CDS       24284625//24981863//27773535
chr4:38831024-38831025(-) m6A CDS       24284625//24981863//27773535
chr4:38831076-38831077(-) m6A CDS       24284625//24981863//27773535
chr4:38831083-38831084(-) m6A CDS       24284625//24981863//27773535
chr4:38831123-38831124(-) m6A 5'UTR       24981863//27773535
chr4:38831150-38831151(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TLR6
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: mcpv-miR-P1-3p
Interactor2: TLR6

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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