Basic Information:

  VIRBase ID:  

VHID00680301

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          SOCS6:  NM_004232     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	SOCS6
miRBase Accession/Entrez ID	MIMAT0010151	9306
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	CIS-4//CIS4//HSPC060//SOCS-4//SOCS-6//SOCS4//SSI4//STAI4//STATI4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SOCS6	chr18:67985996(+) A-I      intronic chr18:67986011(+) A-I      intronic chr18:67985251(+) A-I      intronic chr18:67986012(+) A-I      intronic chr18:67985993(+) A-I      intronic chr18:67985976(+) A-I      intronic chr18:67985994(+) A-I      intronic chr18:67985986(+) A-I      intronic chr18:67985985(+) A-I      intronic chr18:67985189(+) A-I      intronic chr18:67985102(+) A-I      intronic chr18:67977753(+) A-I      intronic chr18:67977657(+) A-I      intronic chr18:67967639(+) A-I      intronic chr18:67985962(+) A-I      intronic chr18:67977644(+) A-I      intronic chr18:67972280(+) A-I      intronic chr18:67972245(+) A-I      intronic chr18:67967579(+) A-I      intronic chr18:67967565(+) A-I      intronic chr18:67967512(+) A-I      intronic chr18:67967508(+) A-I      intronic chr18:67967504(+) A-I      intronic chr18:67967437(+) A-I      intronic chr18:67959670(+) A-I      intronic chr18:67988770(+) A-I      intronic chr18:67988767(+) A-I      intronic chr18:67988750(+) A-I      intronic chr18:67988660(+) A-I      intronic chr18:67988656(+) A-I      intronic chr18:67986092(+) A-I      intronic chr18:67986052(+) A-I      intronic chr18:67986049(+) A-I      intronic chr18:67986029(+) A-I      intronic chr18:67986182(+) A-I      intronic chr18:67967407(+) A-I      intronic chr18:67972187(+) A-I      intronic chr18:67970956(+) A-I      intronic chr18:67974400(+) A-I      intronic chr18:67975593(+) A-I      intronic chr18:67988431(+) A-I      intronic chr18:67988779(+) A-I      intronic chr18:67988387(+) A-I      intronic chr18:67988435(+) A-I      intronic chr18:67967617(+) A-I      intronic chr18:67973345(+) A-I      intronic chr18:67985154(+) A-I      intronic chr18:67974419(+) A-I      intronic chr18:67985232(+) A-I      intronic chr18:67988840(+) A-I      intronic chr18:67988331(+) A-I      intronic chr18:67986078(+) A-I      intronic chr18:67986025(+) A-I      intronic chr18:67985957(+) A-I      intronic chr18:67967480(+) A-I      intronic chr18:67988360(+) A-I      intronic chr18:67986161(+) A-I      intronic chr18:67981412(+) A-I      intronic chr18:67988389(+) A-I      intronic chr18:67988275(+) A-I      intronic chr18:67985190(+) A-I      intronic chr18:67988241(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SOCS6	chr18:67991925-67991926(+) m6A CDS       24284625//24981863//22608085 chr18:67991967-67991968(+) m6A CDS       24284625//24981863//22608085 chr18:67992100-67992101(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr18:67992155-67992156(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr18:67992208-67992209(+) m6A CDS       24284625//25456834//24981863//22608085 chr18:67992331-67992332(+) m6A CDS       24284625 chr18:67992342-67992343(+) m6A CDS       24284625 chr18:67992447-67992448(+) m6A CDS       24284625//24981863//22575960//22608085 chr18:67992502-67992503(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr18:67992524-67992525(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr18:67992545-67992546(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67992559-67992560(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67992631-67992632(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr18:67992712-67992713(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr18:67992718-67992719(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr18:67992877-67992878(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67992887-67992888(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67992949-67992950(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67993037-67993038(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67993064-67993065(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67993132-67993133(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67993185-67993186(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67993235-67993236(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67993253-67993254(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67993294-67993295(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67993361-67993362(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr18:67993447-67993448(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr18:67993460-67993461(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr18:67993474-67993475(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr18:67993522-67993523(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr18:67993551-67993552(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr18:67993577-67993578(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr18:67994450-67994451(+) m6A 3'UTR       24981863 chr18:67994480-67994481(+) m6A 3'UTR       24981863 chr18:67995631-67995632(+) m6A 3'UTR       22575960 chr18:67995641-67995642(+) m6A 3'UTR       22575960 chr18:67995656-67995657(+) m6A 3'UTR       22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SOCS6	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: SOCS6

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg