Detail Information

Basic Information:


  VIRBase ID:  

VHID00680204

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:           CDC23:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcpv-miR-P1-3p CDC23
miRBase
Accession/Entrez ID		 MIMAT0010151 8697
Organism Merkel cell polyomavirus Homo sapiens
Category miRNA mRNA
Alias - ANAPC8//APC8//CUT23

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CDC23
chr5:137530548(-) A-I      intronic
chr5:137530539(-) A-I      intronic
chr5:137529584(-) A-I      intronic
chr5:137529223(-) A-I      intronic
chr5:137529222(-) A-I      intronic
chr5:137529209(-) A-I      intronic
chr5:137529119(-) A-I      intronic
chr5:137529093(-) A-I      intronic
chr5:137526974(-) A-I      intronic
chr5:137526949(-) A-I      intronic
chr5:137526270(-) A-I      intronic
chr5:137526208(-) A-I      intronic
chr5:137529252(-) A-I      intronic
chr5:137529258(-) A-I      intronic
chr5:137529284(-) A-I      intronic
chr5:137546139(-) A-I      intronic
chr5:137548286(-) A-I      intronic
chr5:137547252(-) A-I      intronic
chr5:137546158(-) A-I      intronic
chr5:137547179(-) A-I      intronic
chr5:137546103(-) A-I      intronic
chr5:137546093(-) A-I      intronic
chr5:137545989(-) A-I      intronic
chr5:137546048(-) A-I      intronic
chr5:137545482(-) A-I      intronic
chr5:137545413(-) A-I      intronic
chr5:137545391(-) A-I      intronic
chr5:137545311(-) A-I      intronic
chr5:137545263(-) A-I      intronic
chr5:137545055(-) A-I      intronic
chr5:137545054(-) A-I      intronic
chr5:137545041(-) A-I      intronic
chr5:137545008(-) A-I      intronic
chr5:137545005(-) A-I      intronic
chr5:137544520(-) A-I      intronic
chr5:137543807(-) A-I      intronic
chr5:137542824(-) A-I      intronic
chr5:137540142(-) A-I      intronic
chr5:137540046(-) A-I      intronic
chr5:137540037(-) A-I      intronic
chr5:137539968(-) A-I      intronic
chr5:137539950(-) A-I      intronic
chr5:137539949(-) A-I      intronic
chr5:137538069(-) A-I      intronic
chr5:137538058(-) A-I      intronic
chr5:137538049(-) A-I      intronic
chr5:137536400(-) A-I      intronic
chr5:137535990(-) A-I      intronic
chr5:137535927(-) A-I      intronic
chr5:137535917(-) A-I      intronic
chr5:137532911(-) A-I      intronic
chr5:137532908(-) A-I      intronic
chr5:137532883(-) A-I      intronic
chr5:137532873(-) A-I      intronic
chr5:137532402(-) A-I      intronic
chr5:137530593(-) A-I      intronic
chr5:137530590(-) A-I      intronic
chr5:137530588(-) A-I      intronic
chr5:137530575(-) A-I      intronic
chr5:137530555(-) A-I      intronic
chr5:137540036(-) A-I      intronic
chr5:137532312(-) A-I      intronic
chr5:137540658(-) A-I      intronic
chr5:137538155(-) A-I      intronic
chr5:137545091(-) A-I      intronic
chr5:137546182(-) A-I      intronic
chr5:137543501(-) A-I      intronic
chr5:137532156(-) A-I      intronic
chr5:137543828(-) A-I      intronic
chr5:137529040(-) A-I      intronic
chr5:137528653(-) A-I      intronic
chr5:137543811(-) A-I      intronic
chr5:137548271(-) A-I      intronic
chr5:137535985(-) A-I      intronic
chr5:137540473(-) A-I      intronic
chr5:137525999(-) A-I      intronic
chr5:137533773(-) A-I      intronic
chr5:137539435(-) A-I      intronic
chr5:137526922(-) A-I      intronic
chr5:137544673(-) A-I      intronic
chr5:137538075(-) A-I      intronic
chr5:137539344(-) A-I      intronic
chr5:137536409(-) A-I      intronic
chr5:137530012(-) A-I      intronic
chr5:137538078(-) A-I      intronic
chr5:137536365(-) A-I      intronic
chr5:137538110(-) A-I      intronic
chr5:137538151(-) A-I      intronic
chr5:137526957(-) A-I      intronic
chr5:137545017(-) A-I      intronic
chr5:137544667(-) A-I      intronic
chr5:137536397(-) A-I      intronic
chr5:137536387(-) A-I      intronic
chr5:137542745(-) A-I      intronic
chr5:137546181(-) A-I      intronic
chr5:137536462(-) A-I      intronic
chr5:137540582(-) A-I      intronic
chr5:137530479(-) A-I      intronic
chr5:137544682(-) A-I      intronic
chr5:137543546(-) A-I      intronic
chr5:137536304(-) A-I      intronic
chr5:137536423(-) A-I      intronic
chr5:137540031(-) A-I      intronic
chr5:137535857(-) A-I      intronic
chr5:137544979(-) A-I      intronic
chr5:137536343(-) A-I      intronic
chr5:137530034(-) A-I      intronic
chr5:137535912(-) A-I      intronic
chr5:137539409(-) A-I      intronic
chr5:137536427(-) A-I      intronic
chr5:137539937(-) A-I      intronic
chr5:137535856(-) A-I      intronic
chr5:137543502(-) A-I      intronic
chr5:137535849(-) A-I      intronic
chr5:137528711(-) A-I      intronic
chr5:137526281(-) A-I      intronic
chr5:137544532(-) A-I      intronic
chr5:137547270(-) A-I      intronic
chr5:137540099(-) A-I      intronic
chr5:137540715(-) A-I      intronic
chr5:137536505(-) A-I      intronic
chr5:137544681(-) A-I      intronic
chr5:137528817(-) A-I      intronic
chr5:137536116(-) A-I      intronic
chr5:137548264(-) A-I      intronic
chr5:137536361(-) A-I      intronic
chr5:137538146(-) A-I      intronic
chr5:137547269(-) A-I      intronic
chr5:137526980(-) A-I      intronic
chr5:137535923(-) A-I      intronic
chr5:137526931(-) A-I      intronic
chr5:137536507(-) A-I      intronic
chr5:137539526(-) A-I      intronic
chr5:137536422(-) A-I      intronic
chr5:137540094(-) A-I      intronic
chr5:137528849(-) A-I      intronic
chr5:137548200(-) A-I      intronic
chr5:137536401(-) A-I      intronic
chr5:137535981(-) A-I      intronic
chr5:137547240(-) A-I      intronic
chr5:137540406(-) A-I      intronic
chr5:137526399(-) A-I      intronic
chr5:137525902(-) A-I      intronic
chr5:137525929(-) A-I      intronic
chr5:137535958(-) A-I      intronic
chr5:137540682(-) A-I      intronic
chr5:137525974(-) A-I      intronic
chr5:137540111(-) A-I      intronic
chr5:137525998(-) A-I      intronic
chr5:137528813(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CDC23
chr5:137526957(-) A-G intron -    22484847
chr5:137526958(-) A-G intron -    22484847
chr5:137526980(-) A-G intron -    22484847
chr5:137529266(-) A-G intron -    22484847
chr5:137529973(-) A-G intron -    22484847
chr5:137533324(-) A-G intron -    22484847
chr5:137535923(-) A-G intron -    22484847
chr5:137535931(-) A-G intron -    22484847
chr5:137535958(-) A-G intron -    22484847
chr5:137535959(-) A-G intron -    22484847
chr5:137535981(-) A-G intron -    22484847
chr5:137535985(-) A-G intron -    22484847
chr5:137536397(-) A-G intron -    22484847
chr5:137536401(-) A-G intron -    22484847
chr5:137536409(-) A-G intron -    22484847
chr5:137536422(-) A-G intron -    22484847
chr5:137536423(-) A-G intron -    22484847
chr5:137536426(-) A-G intron -    22484847
chr5:137537256(-) T-C intron -    22484847
chr5:137539350(-) A-G intron -    22484847
chr5:137539526(-) A-G intron -    22484847
chr5:137540036(-) A-G intron -    22484847
chr5:137540086(-) A-G intron -    22484847
chr5:137540094(-) A-G intron -    22484847
chr5:137540099(-) A-G intron -    22484847
chr5:137540111(-) A-G intron -    22484847
chr5:137540137(-) A-G intron -    22484847
chr5:137540406(-) A-G intron -    22484847
chr5:137540658(-) A-G intron -    22484847
chr5:137540715(-) A-G intron -    22484847
chr5:137543502(-) A-G intron -    22484847
chr5:137543546(-) A-G intron -    22484847
chr5:137543811(-) A-G intron -    22484847
chr5:137543828(-) A-G intron -    22484847
chr5:137543829(-) A-G intron -    22484847
chr5:137544673(-) A-G intron -    22484847
chr5:137544681(-) A-G intron -    22484847
chr5:137544682(-) A-G intron -    22484847
chr5:137545078(-) A-G intron -    22484847
chr5:137545091(-) A-G intron -    22484847
chr5:137546043(-) T-C intron -    22484847
chr5:137546174(-) A-G intron -    22484847
chr5:137546181(-) A-G intron -    22484847
chr5:137546206(-) A-G intron -    22484847
chr5:137547240(-) A-G intron -    22484847
chr5:137547269(-) A-G intron -    22484847
chr5:137547270(-) A-G intron -    22484847
chr5:137548271(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CDC23
chr5:137523867-137523868(-) m6A 3'UTR       24981863
chr5:137523877-137523878(-) m6A 3'UTR       24981863
chr5:137523908-137523909(-) m6A 3'UTR       24981863
chr5:137524006-137524007(-) m6A 3'UTR       24981863
chr5:137524776-137524777(-) m6A CDS//exon       27773535
chr5:137524787-137524788(-) m6A CDS//exon       27773535
chr5:137528229-137528230(-) Gm CDS//exon       -
chr5:137536629-137536630(-) m6A exon//intron       -
chr5:137537120-137537121(-) m6A 3'UTR//CDS//exon       24981863
chr5:137537816-137537817(-) m6A CDS//exon//intron       24981863
chr5:137541652-137541653(-) m6A 3'UTR//intron       27773535
chr5:137541714-137541715(-) m6A 3'UTR//intron       27773535
chr5:137541775-137541776(-) m6A 3'UTR//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CDC23
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: mcpv-miR-P1-3p
Interactor2: CDC23

Evidence Support:


Prediction-Evidence miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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