Basic Information:

  VIRBase ID:  

VHID00679903

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          SLC12A4:  NM_005072     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	SLC12A4
miRBase Accession/Entrez ID	MIMAT0010151	6560
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	CTC-479C5.17//hKCC1//KCC1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC12A4	chr16:67990453(-) A-I      intronic chr16:67989767(-) A-I      intronic chr16:67989751(-) A-I      intronic chr16:67989700(-) A-I      intronic chr16:67989699(-) A-I      intronic chr16:67989698(-) A-I      intronic chr16:67989670(-) A-I      intronic chr16:67991262(-) A-I      intronic chr16:67989549(-) A-I      intronic chr16:67989390(-) A-I      intronic chr16:67990525(-) A-I      intronic chr16:67990524(-) A-I      intronic chr16:67991345(-) A-I      intronic chr16:67991344(-) A-I      intronic chr16:67990477(-) A-I      intronic chr16:67990397(-) A-I      intronic chr16:67989660(-) A-I      intronic chr16:67996663(-) A-I      intronic chr16:67990423(-) A-I      intronic chr16:67990535(-) A-I      intronic chr16:67989442(-) A-I      intronic chr16:67990004(-) A-I      intronic chr16:67989433(-) A-I      intronic chr16:67991010(-) A-I      intronic chr16:67991237(-) A-I      intronic chr16:67990465(-) A-I      intronic chr16:67991277(-) A-I      intronic chr16:67991251(-) A-I      intronic chr16:67990416(-) A-I      intronic chr16:67991169(-) A-I      intronic chr16:67989980(-) A-I      intronic chr16:67983080(-) A-I      intronic chr16:67990581(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC12A4	chr16:67977381-67977382(-) m6A 3'UTR       24284625//24209618//25456834//24981863 chr16:67977405-67977406(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828 chr16:67977426-67977427(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828 chr16:67977509-67977510(-) m6A 3'UTR       24284625//24209618//25456834//27371828//27773536 chr16:67977558-67977559(-) m6A 3'UTR       24209618//25456834//27371828//27773536 chr16:67977813-67977814(-) m6A 3'UTR       24284625 chr16:67978047-67978048(-) m6A 3'UTR       24284625//25456834//27371828 chr16:67978173-67978174(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr16:67978178-67978179(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr16:67978247-67978248(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085 chr16:67978280-67978281(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr16:67978483-67978484(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr16:67978528-67978529(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr16:67978546-67978547(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr16:67978592-67978593(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr16:67978619-67978620(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr16:67978698-67978699(-) m6A 3'UTR//exon       24284625 chr16:67978833-67978834(-) m6A 3'UTR//CDS//exon       24284625 chr16:67978991-67978992(-) m6A 3'UTR//CDS//exon       24284625 chr16:67979009-67979010(-) m6A 3'UTR//CDS//exon       24284625 chr16:67979030-67979031(-) m6A 3'UTR//CDS//exon       24284625//27773535 chr16:67979120-67979121(-) m6A 3'UTR//CDS//exon       24284625//27773535 chr16:67979176-67979177(-) m6A exon//intron       24284625 chr16:67979207-67979208(-) m6A exon//intron       24284625 chr16:67979255-67979256(-) m6A exon//intron       24284625 chr16:67979319-67979320(-) m6A CDS//exon       24284625//27773535//27371828 chr16:67979326-67979327(-) m6A CDS//exon       24284625//27773535//27371828 chr16:67979343-67979344(-) m6A CDS//exon       24284625//27773535//27371828 chr16:67979350-67979351(-) m6A CDS//exon       24284625//27773535//27371828 chr16:67979683-67979684(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773535//27371828 chr16:67979693-67979694(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773535//27371828 chr16:67979911-67979912(-) m6A 3'UTR//CDS//exon       - chr16:67985860-67985861(-) m6A 3'UTR//CDS//exon       27773535 chr16:67985868-67985869(-) m6A 3'UTR//CDS//exon       27773535 chr16:67985881-67985882(-) m6A 3'UTR//CDS//exon       27773535 chr16:67985904-67985905(-) m6A 3'UTR//CDS//exon       27773535 chr16:67985917-67985918(-) m6A 3'UTR//CDS//exon       27773535 chr16:67994501-67994502(-) Gm intron       - chr16:67997383-67997384(-) m6A 5'UTR//CDS//exon//intron       24284625//25456834//27773535 chr16:67997855-67997856(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828 chr16:67997862-67997863(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828 chr16:68002376-68002377(-) m6A CDS//exon//intron       24981863//22575960 chr16:68002505-68002506(-) m6A 5'UTR//CDS//exon//intron       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC12A4	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: SLC12A4

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg