Detail Information

Basic Information:


  VIRBase ID:  

VHID00679271

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:           FLT4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcpv-miR-P1-3p FLT4
miRBase
Accession/Entrez ID		 MIMAT0010151 2324
Organism Merkel cell polyomavirus Homo sapiens
Category miRNA mRNA
Alias - CHTD7//FLT-4//FLT41//LMPH1A//LMPHM1//PCL//VEGFR-3//VEGFR3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FLT4
chr5:180064230(-) A-I      intronic
chr5:180064167(-) A-I      intronic
chr5:180032085(-) A-I      intronic
chr5:180032029(-) A-I      intronic
chr5:180064657(-) A-I      intronic
chr5:180064644(-) A-I      intronic
chr5:180064710(-) A-I      intronic
chr5:180064164(-) A-I      intronic
chr5:180032237(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FLT4
chr5:180028884-180028885(-) m6A 3'UTR       25456834//24981863//27371828//27773536//22608085
chr5:180028908-180028909(-) m6A 3'UTR       25456834//24981863//27371828//27773536//22608085
chr5:180028933-180028934(-) m6A 3'UTR       25456834//24981863//27371828//27773536//22608085
chr5:180028942-180028943(-) m6A 3'UTR       25456834//24981863//27371828//27773536//22608085
chr5:180029008-180029009(-) m6A 3'UTR       24209618//25456834//24981863//27371828//27773536//22608085
chr5:180029127-180029128(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr5:180029138-180029139(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr5:180029177-180029178(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr5:180029221-180029222(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr5:180029240-180029241(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr5:180029328-180029329(-) m6A 3'UTR       25456834//24981863//27371828//27773536//22608085
chr5:180029431-180029432(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr5:180029490-180029491(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr5:180029499-180029500(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr5:180030035-180030036(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr5:180030058-180030059(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr5:180030097-180030098(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr5:180030111-180030112(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr5:180030175-180030176(-) m6A 3'UTR//exon       25456834//24981863//27371828//27773536//22608085
chr5:180030180-180030181(-) m6A 3'UTR//exon       25456834//24981863//27371828//27773536//22608085
chr5:180030204-180030205(-) m6A CDS//exon       25456834//24981863//27371828//27773536//22608085
chr5:180030243-180030244(-) m6A CDS//exon       25456834//24981863//27371828//27773536//22608085
chr5:180030380-180030381(-) m6A CDS//exon       27371828
chr5:180035124-180035125(-) m6A 3'UTR//exon//intron       24284625//24981863//22608085
chr5:180035145-180035146(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863//22608085
chr5:180035154-180035155(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//22608085
chr5:180035167-180035168(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//22608085
chr5:180035202-180035203(-) m6A 3'UTR//exon//intron       24209618//24981863//22608085
chr5:180035210-180035211(-) m6A 3'UTR//exon//intron       24209618//24981863//22608085
chr5:180035984-180035985(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr5:180036039-180036040(-) m6A 3'UTR//CDS//exon       24981863
chr5:180036043-180036044(-) m6A 3'UTR//CDS//exon       22608085
chr5:180036051-180036052(-) m6A 3'UTR//CDS//exon       22608085
chr5:180038369-180038370(-) m6A 3'UTR//CDS//exon       27773536
chr5:180039565-180039566(-) m6A 3'UTR//CDS//exon       27371828
chr5:180039578-180039579(-) m6A 3'UTR//CDS//exon       27371828
chr5:180039593-180039594(-) m6A 3'UTR//CDS//exon       27371828
chr5:180040731-180040732(-) m6A exon//intron       25456834//27371828
chr5:180040823-180040824(-) m6A exon//intron       25456834//27371828//22608085
chr5:180040880-180040881(-) m6A exon//intron       25456834//27371828//22608085
chr5:180043391-180043392(-) m6A 3'UTR//CDS//exon       27773536
chr5:180043403-180043404(-) m6A 3'UTR//CDS//exon       27773536
chr5:180043460-180043461(-) m6A 3'UTR//CDS//exon       27773536
chr5:180043475-180043476(-) m6A 3'UTR//CDS//exon       27773536
chr5:180043987-180043988(-) m6A 3'UTR//CDS//exon       27773536
chr5:180045777-180045778(-) m6A 3'UTR//CDS//exon       27773536
chr5:180045808-180045809(-) m6A 3'UTR//CDS//exon       27773536
chr5:180053160-180053161(-) m6A 3'UTR//CDS//exon       27773536
chr5:180057706-180057707(-) m6A CDS//exon       27773536
chr5:180057724-180057725(-) m6A CDS//exon       27773536
chr5:180057733-180057734(-) m6A CDS//exon       27773536
chr5:180057739-180057740(-) m6A CDS//exon       27773536
chr5:180057795-180057796(-) m6A CDS//exon       27773536
chr5:180058738-180058739(-) m6A CDS//exon       27773536
chr5:180076497-180076498(-) m6A CDS//exon       27773536
chr5:180076565-180076566(-) m6A 5'UTR       27773536
chr5:180076601-180076602(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate FLT4
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: mcpv-miR-P1-3p
Interactor2: FLT4

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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