Basic Information:

  VIRBase ID:  

VHID00679251

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:  MIMAT0010151          FANCF:  NM_022725     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-3p	FANCF
miRBase Accession/Entrez ID	MIMAT0010151	2188
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAF

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FANCF	chr11:22646097-22646098(-) m6A 3'UTR       27773535 chr11:22646270-22646271(-) m6A CDS       24209618//25456834//24981863//27773535 chr11:22646314-22646315(-) m6A CDS       24209618//25456834//24981863//28052920//27773535//27371828 chr11:22646365-22646366(-) m6A CDS       24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960 chr11:22646467-22646468(-) m6A CDS       24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960 chr11:22646517-22646518(-) m6A CDS       24209618//25456834//24981863//28052920//27773535//27371828//22575960 chr11:22646687-22646688(-) m6A CDS       24209618//25456834//24981863//27371828//22575960 chr11:22646760-22646761(-) m6A CDS       25456834//24981863//27371828//27773536 chr11:22646863-22646864(-) m6A CDS       25456834//24981863//27371828 chr11:22646877-22646878(-) m6A CDS       25456834//24981863//27371828 chr11:22646895-22646896(-) m6A CDS       25456834//24981863//27371828 chr11:22646974-22646975(-) m6A CDS       25456834//24981863//27371828 chr11:22647057-22647058(-) m6A CDS       25456834//27371828//27773536 chr11:22647111-22647112(-) m6A CDS       25456834//27371828//27773536 chr11:22647276-22647277(-) m6A CDS       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FANCF	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-3p
Interactor2: FANCF

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg