Detail Information

Basic Information:


  VIRBase ID:  

VHID00678904

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-3p:           ACTN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcpv-miR-P1-3p ACTN1
miRBase
Accession/Entrez ID		 MIMAT0010151 87
Organism Merkel cell polyomavirus Homo sapiens
Category miRNA mRNA
Alias - BDPLT15

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ACTN1
chr14:69421105(-) A-I      intronic
chr14:69421121(-) A-I      intronic
chr14:69421113(-) A-I      intronic
chr14:69421112(-) A-I      intronic
chr14:69416778(-) A-I      intronic
chr14:69400442(-) A-I      intronic
chr14:69400469(-) A-I      intronic
chr14:69416828(-) A-I      intronic
chr14:69416899(-) A-I      intronic
chr14:69416959(-) A-I      intronic
chr14:69400434(-) A-I      intronic
chr14:69400572(-) A-I      intronic
chr14:69401836(-) A-I      intronic
chr14:69417459(-) A-I      intronic
chr14:69417529(-) A-I      intronic
chr14:69379188(-) A-I      intronic
chr14:69384603(-) A-I      intronic
chr14:69350426(-) A-I      intronic
chr14:69379156(-) A-I      intronic
chr14:69381473(-) A-I      intronic
chr14:69384591(-) A-I      intronic
chr14:69400454(-) A-I      intronic
chr14:69400455(-) A-I      intronic
chr14:69417528(-) A-I      intronic
chr14:69343626(-) A-I      intronic
chr14:69350435(-) A-I      intronic
chr14:69421277(-) A-I      intronic
chr14:69415232(-) A-I      intronic
chr14:69400562(-) A-I      intronic
chr14:69417417(-) A-I      intronic
chr14:69364770(-) A-I      intronic
chr14:69350271(-) A-I      intronic
chr14:69402027(-) A-I      intronic
chr14:69379380(-) A-I      intronic
chr14:69415248(-) A-I      intronic
chr14:69363838(-) A-I      intronic
chr14:69400481(-) A-I      intronic
chr14:69355526(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ACTN1
chr14:69353342(-) C-G intron -    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ACTN1
chr14:69341320-69341321(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr14:69341362-69341363(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr14:69341370-69341371(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr14:69341621-69341622(-) m6A CDS//exon       24284625//24981863//26404942//22575960
chr14:69341732-69341733(-) m6A CDS//exon       24284625//26404942//27773535
chr14:69341768-69341769(-) m6A CDS//intron       24284625//27773535
chr14:69343802-69343803(-) m6A CDS//exon       26404942//27773535//22575960
chr14:69343838-69343839(-) m6A CDS//exon       26404942//27773535//22575960
chr14:69343860-69343861(-) m6A CDS//exon       26404942//27773535//22575960
chr14:69343919-69343920(-) m6A CDS//exon       26404942//27773535//27773536//22575960
chr14:69345356-69345357(-) m6A exon//intron       27773535
chr14:69345419-69345420(-) m6A exon//intron       27773535
chr14:69346760-69346761(-) m6A CDS//exon       24284625//24981863//26404942//27773535//27371828
chr14:69346779-69346780(-) m6A CDS//exon       24284625//24981863//26404942//27773535//27371828
chr14:69347642-69347643(-) Cm CDS//exon       -
chr14:69347662-69347663(-) m6A CDS//exon//intron       24284625//26404942//27773535//22575960
chr14:69347672-69347673(-) m6A CDS//exon//intron       24284625//26404942//27773535//22575960
chr14:69347812-69347813(-) m6A exon//intron       22575960
chr14:69349185-69349186(-) m6A CDS//exon//intron       24981863//22575960
chr14:69349283-69349284(-) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//27371828//22575960
chr14:69349593-69349594(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828//22575960
chr14:69349666-69349667(-) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//27371828//22575960
chr14:69349769-69349770(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828
chr14:69350009-69350010(-) m6A exon//intron       24284625//24981863//27773535//27371828
chr14:69350918-69350919(-) m6A CDS//exon       26404942//22575960
chr14:69350927-69350928(-) m6A CDS//exon       26404942//22575960
chr14:69351003-69351004(-) m6A CDS//exon       26404942//27371828//22575960
chr14:69351013-69351014(-) m6A CDS//exon       26404942//27371828//22575960
chr14:69351021-69351022(-) m6A CDS//exon       26404942//27371828//22575960
chr14:69351534-69351535(-) m6A CDS//exon       24284625//24981863//26404942//27773535//27371828//22575960
chr14:69351591-69351592(-) m6A CDS//exon       24284625//24981863//26404942//27773535//27371828//27773536//22575960
chr14:69352180-69352181(-) m6A CDS//exon       24284625//24981863//26404942//27773535//27371828//27773536//22575960
chr14:69352256-69352257(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr14:69352264-69352265(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr14:69352345-69352346(-) m6A exon//intron       24284625//25456834//27773535//27371828//27773536//22575960
chr14:69354593-69354594(-) m6A exon//intron       24209618//24981863//27773535//27371828
chr14:69354618-69354619(-) m6A exon//intron       24209618//24981863//27773535//27371828
chr14:69354647-69354648(-) m6A exon//intron       24209618//24981863//27773535//27371828
chr14:69354661-69354662(-) m6A exon//intron       24209618//24981863//27773535//27371828
chr14:69354720-69354721(-) m6A exon//intron       24209618//24981863//27773535//27371828
chr14:69354831-69354832(-) m6A exon//intron       24209618//24981863//27371828
chr14:69354921-69354922(-) m6A exon//intron       24209618//25456834//27371828
chr14:69356861-69356862(-) m6A CDS       24284625//24209618//26404942//22575960
chr14:69356911-69356912(-) m6A CDS       24284625//24209618//26404942//27371828//22575960
chr14:69356936-69356937(-) Gm CDS       -
chr14:69358828-69358829(-) m6A CDS       24284625//27371828//22575960
chr14:69358902-69358903(-) m6A CDS       24284625//26404942//27371828//22575960
chr14:69358911-69358912(-) m6A CDS       24284625//26404942//27371828//22575960
chr14:69358944-69358945(-) m6A CDS       24284625//26404942//27773535//27371828//22575960
chr14:69358959-69358960(-) m6A CDS       24284625//26404942//27773535//27371828//22575960
chr14:69360393-69360394(-) m6A CDS       26404942//27773535//27371828//22575960
chr14:69360406-69360407(-) Cm CDS       -
chr14:69360457-69360458(-) m6A CDS//exon       27773535//27371828//22575960
chr14:69369267-69369268(-) m6A CDS//exon       27371828
chr14:69371397-69371398(-) m6A CDS//exon       26404942//27371828
chr14:69376683-69376684(-) m6A CDS//exon       26404942//27371828//22575960
chr14:69376714-69376715(-) m6A CDS//exon       26404942//27371828//22575960
chr14:69376756-69376757(-) m6A CDS//exon       26404942//27773535//27371828//22575960
chr14:69378886-69378887(-) m6A CDS//exon       26404942//27773535//27371828//22575960
chr14:69378914-69378915(-) m6A CDS//exon       26404942//27773535//27371828//22575960
chr14:69387744-69387745(-) m6A CDS//exon       26404942//27773535//27371828//22575960
chr14:69392321-69392322(-) m6A 5'UTR//CDS       24284625//26404942//27773535//27371828//22575960
chr14:69392333-69392334(-) m6A 5'UTR//CDS       24284625//26404942//27773535//27371828//22575960
chr14:69392346-69392347(-) m6A 5'UTR//CDS       24284625//26404942//27773535//27371828//22575960
chr14:69414106-69414107(-) m6A 5'UTR//intron       24284625//26404942//27773535//27371828
chr14:69414129-69414130(-) m6A 5'UTR//intron       24284625//27773535//27371828
chr14:69414158-69414159(-) m6A 5'UTR//intron       24284625//27773535//27371828
chr14:69445183-69445184(-) m6A 5'UTR//intron       -
chr14:69445319-69445320(-) m6A 5'UTR//intron       -
chr14:69445696-69445697(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960
chr14:69445708-69445709(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960
chr14:69445714-69445715(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960
chr14:69445720-69445721(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960
chr14:69445748-69445749(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960
chr14:69445768-69445769(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960
chr14:69445794-69445795(-) m6A 5'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22575960
chr14:69445909-69445910(-) m6A 5'UTR       24284625//24209618//24981863//26404942//27773535//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ACTN1
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: mcpv-miR-P1-3p
Interactor2: ACTN1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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