Basic Information:

  VIRBase ID:  

VHID00676746

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-5p:  MIMAT0010150          RAB39A:  NM_017516     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-5p	RAB39A
miRBase Accession/Entrez ID	MIMAT0010150	54734
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	RAB39

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RAB39A	chr11:107807900(+) A-I      intronic chr11:107807917(+) A-I      intronic chr11:107826394(+) A-I      intronic chr11:107808000(+) A-I      intronic chr11:107805085(+) A-I      intronic chr11:107804944(+) A-I      intronic chr11:107809712(+) A-I      intronic chr11:107815230(+) A-I      intronic chr11:107809200(+) A-I      intronic chr11:107809713(+) A-I      intronic chr11:107809718(+) A-I      intronic chr11:107809743(+) A-I      intronic chr11:107809758(+) A-I      intronic chr11:107811170(+) A-I      intronic chr11:107808140(+) A-I      intronic chr11:107811526(+) A-I      intronic chr11:107823142(+) A-I      intronic chr11:107811546(+) A-I      intronic chr11:107811550(+) A-I      intronic chr11:107811592(+) A-I      intronic chr11:107814137(+) A-I      intronic chr11:107814145(+) A-I      intronic chr11:107823187(+) A-I      intronic chr11:107814176(+) A-I      intronic chr11:107815296(+) A-I      intronic chr11:107812744(+) A-I      intronic chr11:107815313(+) A-I      intronic chr11:107803578(+) A-I      intronic chr11:107815318(+) A-I      intronic chr11:107815698(+) A-I      intronic chr11:107815699(+) A-I      intronic chr11:107815762(+) A-I      intronic chr11:107815786(+) A-I      intronic chr11:107817550(+) A-I      intronic chr11:107818076(+) A-I      intronic chr11:107819785(+) A-I      intronic chr11:107819792(+) A-I      intronic chr11:107819861(+) A-I      intronic chr11:107821441(+) A-I      intronic chr11:107825852(+) A-I      intronic chr11:107823121(+) A-I      intronic chr11:107807973(+) A-I      intronic chr11:107825930(+) A-I      intronic chr11:107809368(+) A-I      intronic chr11:107807926(+) A-I      intronic chr11:107807923(+) A-I      intronic chr11:107802778(+) A-I      intronic chr11:107802686(+) A-I      intronic chr11:107801807(+) A-I      intronic chr11:107801803(+) A-I      intronic chr11:107801503(+) A-I      intronic chr11:107805566(+) A-I      intronic chr11:107804333(+) A-I      intronic chr11:107808055(+) A-I      intronic chr11:107821442(+) A-I      intronic chr11:107808003(+) A-I      intronic chr11:107802679(+) A-I      intronic chr11:107809390(+) A-I      intronic chr11:107812775(+) A-I      intronic chr11:107829667(+) A-I      intronic chr11:107808128(+) A-I      intronic chr11:107833814(+) A-I      3'UTR chr11:107819373(+) A-I      intronic chr11:107803562(+) A-I      intronic chr11:107801329(+) A-I      intronic chr11:107804451(+) A-I      intronic chr11:107815640(+) A-I      intronic chr11:107813302(+) A-I      intronic chr11:107805109(+) A-I      intronic chr11:107818040(+) A-I      intronic chr11:107809215(+) A-I      intronic chr11:107812705(+) A-I      intronic chr11:107811242(+) A-I      intronic chr11:107811044(+) A-I      intronic chr11:107808068(+) A-I      intronic chr11:107819891(+) A-I      intronic chr11:107809898(+) A-I      intronic chr11:107811601(+) A-I      intronic chr11:107817669(+) A-I      intronic chr11:107811511(+) A-I      intronic chr11:107807879(+) A-I      intronic chr11:107813312(+) A-I      intronic chr11:107804272(+) A-I      intronic chr11:107807912(+) A-I      intronic chr11:107813190(+) A-I      intronic chr11:107804199(+) A-I      intronic chr11:107807994(+) A-I      intronic chr11:107808966(+) A-I      intronic chr11:107819943(+) A-I      intronic chr11:107821373(+) A-I      intronic chr11:107817665(+) A-I      intronic chr11:107813311(+) A-I      intronic chr11:107809315(+) A-I      intronic chr11:107811568(+) A-I      intronic chr11:107823186(+) A-I      intronic chr11:107801832(+) A-I      intronic chr11:107809369(+) A-I      intronic chr11:107803576(+) A-I      intronic chr11:107819339(+) A-I      intronic chr11:107806696(+) A-I      intronic chr11:107822476(+) A-I      intronic chr11:107823251(+) A-I      intronic chr11:107805063(+) A-I      intronic chr11:107811190(+) A-I      intronic chr11:107809222(+) A-I      intronic chr11:107807931(+) A-I      intronic chr11:107821412(+) A-I      intronic chr11:107807911(+) A-I      intronic chr11:107823151(+) A-I      intronic chr11:107801328(+) A-I      intronic chr11:107815656(+) A-I      intronic chr11:107815649(+) A-I      intronic chr11:107815242(+) A-I      intronic chr11:107817651(+) A-I      intronic chr11:107815239(+) A-I      intronic chr11:107808101(+) A-I      intronic chr11:107804886(+) A-I      intronic chr11:107813327(+) A-I      intronic chr11:107809766(+) A-I      intronic chr11:107801806(+) A-I      intronic chr11:107801882(+) A-I      intronic chr11:107804925(+) A-I      intronic chr11:107833854(+) A-I      3'UTR chr11:107833997(+) A-I      3'UTR chr11:107834057(+) A-I      3'UTR chr11:107833830(+) A-I      3'UTR chr11:107833986(+) A-I      3'UTR chr11:107833855(+) A-I      3'UTR chr11:107834058(+) A-I      3'UTR chr11:107833909(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAB39A	chr11:107799245-107799246(+) m6A 5'UTR       25456834//22608085 chr11:107799300-107799301(+) m6A CDS       25456834//22608085 chr11:107799340-107799341(+) m6A CDS       25456834//22608085 chr11:107799436-107799437(+) m6A CDS       22608085 chr11:107799496-107799497(+) m6A CDS       24981863//22608085 chr11:107799506-107799507(+) m6A CDS       24981863//22608085 chr11:107832749-107832750(+) m6A CDS       24981863//22608085 chr11:107832821-107832822(+) m6A CDS       24209618//25456834//24981863//22608085 chr11:107832875-107832876(+) m6A CDS       24209618//25456834//24981863//22608085 chr11:107832886-107832887(+) m6A CDS       24209618//25456834//24981863//22608085 chr11:107832909-107832910(+) m6A CDS       24209618//25456834//24981863//22608085 chr11:107832964-107832965(+) m6A CDS       24209618//25456834//24981863//22608085 chr11:107832974-107832975(+) m6A CDS       24209618//25456834//24981863//22608085 chr11:107833104-107833105(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr11:107833116-107833117(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr11:107833126-107833127(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr11:107833205-107833206(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RAB39A	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-5p
Interactor2: RAB39A

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg