Basic Information:

  VIRBase ID:  

VHID00676720

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-5p:  MIMAT0010150          TRMT13:  NR_135078     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-5p	TRMT13
miRBase Accession/Entrez ID	MIMAT0010150	54482
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	CCDC76

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TRMT13	chr1:100611353(+) A-I      intronic chr1:100611323(+) A-I      intronic chr1:100602775(+) A-I      intronic chr1:100604558(+) A-I      intronic chr1:100604617(+) A-I      intronic chr1:100604624(+) A-I      intronic chr1:100606935(+) A-I      intronic chr1:100606950(+) A-I      intronic chr1:100612107(+) A-I      intronic chr1:100612189(+) A-I      intronic chr1:100612291(+) A-I      intronic chr1:100611347(+) A-I      intronic chr1:100612179(+) A-I      intronic chr1:100611381(+) A-I      intronic chr1:100611306(+) A-I      intronic chr1:100611241(+) A-I      intronic chr1:100612201(+) A-I      intronic chr1:100612162(+) A-I      intronic chr1:100611320(+) A-I      intronic chr1:100611373(+) A-I      intronic chr1:100611428(+) A-I      intronic chr1:100605575(+) A-I      intronic chr1:100611312(+) A-I      intronic chr1:100611209(+) A-I      intronic chr1:100611166(+) A-I      intronic chr1:100612112(+) A-I      intronic chr1:100611384(+) A-I      intronic chr1:100611265(+) A-I      intronic chr1:100611342(+) A-I      intronic chr1:100605557(+) A-I      intronic chr1:100611409(+) A-I      intronic chr1:100612275(+) A-I      intronic chr1:100605662(+) A-I      intronic chr1:100611316(+) A-I      intronic chr1:100611414(+) A-I      intronic chr1:100612161(+) A-I      intronic chr1:100611258(+) A-I      intronic chr1:100611293(+) A-I      intronic chr1:100612166(+) A-I      intronic chr1:100605570(+) A-I      intronic chr1:100605634(+) A-I      intronic chr1:100611204(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TRMT13	chr1:100611293(+) A-I intron -    21960545   //22327324 chr1:100611320(+) A-I intron -    21960545   //22327324 chr1:100611381(+) A-I intron -    22327324 chr1:100612201(+) A-I intron -    21960545 chr1:100611209(+) A-G intron -    22484847 chr1:100611241(+) A-G intron -    22484847 chr1:100611293(+) A-G intron -    22484847 chr1:100611316(+) A-G intron -    22484847 chr1:100611320(+) A-G intron -    22484847 chr1:100611342(+) A-G intron -    22484847 chr1:100611381(+) A-G intron -    22484847 chr1:100611384(+) A-G intron -    22484847 chr1:100612162(+) A-G intron -    22484847 chr1:100612166(+) A-G intron -    22484847 chr1:100612201(+) A-G intron -    22484847 chr1:100605575(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TRMT13	chr1:100598852-100598853(+) m6A CDS       24981863//22608085 chr1:100613510-100613511(+) m6A CDS       22608085 chr1:100613541-100613542(+) m6A CDS       27773535//22608085 chr1:100613605-100613606(+) m6A CDS       24981863//27773535//22608085 chr1:100613660-100613661(+) m6A CDS       24981863//27773535//22608085 chr1:100613763-100613764(+) m6A CDS       24981863//22608085 chr1:100613775-100613776(+) m6A CDS       24981863//22608085 chr1:100614299-100614300(+) m6A CDS       24981863//22608085 chr1:100614364-100614365(+) m6A CDS       24981863//22608085 chr1:100614477-100614478(+) m6A 3'UTR       24981863//27773535//22608085 chr1:100614505-100614506(+) m6A 3'UTR       24981863//27773535//22608085 chr1:100614544-100614545(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TRMT13	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-5p
Interactor2: TRMT13

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg