Detail Information

Basic Information:


  VIRBase ID:  

VHID00675972

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-5p:           SERINC3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcpv-miR-P1-5p SERINC3
miRBase
Accession/Entrez ID		 MIMAT0010150 10955
Organism Merkel cell polyomavirus Homo sapiens
Category miRNA mRNA
Alias - AIGP1//DIFF33//SBBI99//TDE//TDE1//TMS-1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SERINC3
chr20:43138326(-) A-I      intronic
chr20:43138330(-) A-I      intronic
chr20:43144462(-) A-I      intronic
chr20:43144475(-) A-I      intronic
chr20:43144479(-) A-I      intronic
chr20:43144515(-) A-I      intronic
chr20:43145106(-) A-I      intronic
chr20:43145131(-) A-I      intronic
chr20:43131465(-) A-I      intronic
chr20:43131075(-) A-I      intronic
chr20:43131106(-) A-I      intronic
chr20:43131434(-) A-I      intronic
chr20:43137033(-) A-I      intronic
chr20:43131441(-) A-I      intronic
chr20:43140788(-) A-I      intronic
chr20:43138421(-) A-I      intronic
chr20:43135055(-) A-I      intronic
chr20:43132165(-) A-I      intronic
chr20:43132203(-) A-I      intronic
chr20:43132206(-) A-I      intronic
chr20:43132245(-) A-I      intronic
chr20:43134402(-) A-I      intronic
chr20:43134414(-) A-I      intronic
chr20:43134416(-) A-I      intronic
chr20:43134419(-) A-I      intronic
chr20:43138302(-) A-I      intronic
chr20:43125269(-) A-I      intronic
chr20:43125255(-) A-I      intronic
chr20:43131310(-) A-I      intronic
chr20:43125243(-) A-I      intronic
chr20:43145199(-) A-I      intronic
chr20:43145168(-) A-I      intronic
chr20:43145067(-) A-I      intronic
chr20:43144821(-) A-I      intronic
chr20:43144795(-) A-I      intronic
chr20:43144585(-) A-I      intronic
chr20:43144493(-) A-I      intronic
chr20:43144492(-) A-I      intronic
chr20:43144384(-) A-I      intronic
chr20:43143938(-) A-I      intronic
chr20:43134212(-) A-I      intronic
chr20:43143912(-) A-I      intronic
chr20:43143871(-) A-I      intronic
chr20:43143280(-) A-I      intronic
chr20:43143227(-) A-I      intronic
chr20:43139782(-) A-I      intronic
chr20:43139732(-) A-I      intronic
chr20:43139730(-) A-I      intronic
chr20:43139728(-) A-I      intronic
chr20:43139725(-) A-I      intronic
chr20:43139408(-) A-I      intronic
chr20:43139389(-) A-I      intronic
chr20:43139334(-) A-I      intronic
chr20:43139261(-) A-I      intronic
chr20:43138359(-) A-I      intronic
chr20:43138353(-) A-I      intronic
chr20:43138345(-) A-I      intronic
chr20:43138341(-) A-I      intronic
chr20:43138285(-) A-I      intronic
chr20:43134087(-) A-I      intronic
chr20:43132232(-) A-I      intronic
chr20:43132046(-) A-I      intronic
chr20:43131355(-) A-I      intronic
chr20:43131167(-) A-I      intronic
chr20:43131162(-) A-I      intronic
chr20:43137102(-) A-I      intronic
chr20:43130953(-) A-I      intronic
chr20:43125295(-) A-I      intronic
chr20:43137094(-) A-I      intronic
chr20:43137091(-) A-I      intronic
chr20:43136401(-) A-I      intronic
chr20:43135179(-) A-I      intronic
chr20:43135143(-) A-I      intronic
chr20:43134876(-) A-I      intronic
chr20:43134875(-) A-I      intronic
chr20:43134859(-) A-I      intronic
chr20:43134779(-) A-I      intronic
chr20:43134716(-) A-I      intronic
chr20:43134468(-) A-I      intronic
chr20:43134417(-) A-I      intronic
chr20:43134411(-) A-I      intronic
chr20:43134336(-) A-I      intronic
chr20:43136386(-) A-I      intronic
chr20:43145146(-) A-I      intronic
chr20:43134862(-) A-I      intronic
chr20:43131415(-) A-I      intronic
chr20:43143981(-) A-I      intronic
chr20:43137075(-) A-I      intronic
chr20:43144569(-) A-I      intronic
chr20:43139623(-) A-I      intronic
chr20:43139400(-) A-I      intronic
chr20:43137124(-) A-I      intronic
chr20:43145126(-) A-I      intronic
chr20:43138379(-) A-I      intronic
chr20:43138310(-) A-I      intronic
chr20:43144469(-) A-I      intronic
chr20:43139662(-) A-I      intronic
chr20:43143943(-) A-I      intronic
chr20:43134343(-) A-I      intronic
chr20:43138342(-) A-I      intronic
chr20:43144582(-) A-I      intronic
chr20:43134459(-) A-I      intronic
chr20:43136427(-) A-I      intronic
chr20:43132045(-) A-I      intronic
chr20:43144843(-) A-I      intronic
chr20:43145142(-) A-I      intronic
chr20:43145209(-) A-I      intronic
chr20:43137055(-) A-I      intronic
chr20:43139291(-) A-I      intronic
chr20:43127026(-) A-I      3'UTR
chr20:43126965(-) A-I      3'UTR
chr20:43126959(-) A-I      3'UTR
chr20:43131433(-) A-I      intronic
chr20:43145207(-) A-I      intronic
chr20:43139805(-) A-I      intronic
chr20:43139827(-) A-I      intronic
chr20:43131216(-) A-I      intronic
chr20:43139344(-) A-I      intronic
chr20:43134027(-) A-I      intronic
chr20:43143987(-) A-I      intronic
chr20:43145249(-) A-I      intronic
chr20:43139287(-) A-I      intronic
chr20:43144880(-) A-I      intronic
chr20:43136948(-) A-I      intronic
chr20:43131337(-) A-I      intronic
chr20:43144407(-) A-I      intronic
chr20:43134034(-) A-I      intronic
chr20:43144929(-) A-I      intronic
chr20:43143908(-) A-I      intronic
chr20:43132044(-) A-I      intronic
chr20:43139715(-) A-I      intronic
chr20:43136388(-) A-I      intronic
chr20:43144886(-) A-I      intronic
chr20:43131497(-) A-I      intronic
chr20:43131386(-) A-I      intronic
chr20:43131376(-) A-I      intronic
chr20:43143815(-) A-I      intronic
chr20:43131392(-) A-I      intronic
chr20:43131380(-) A-I      intronic
chr20:43134101(-) A-I      intronic
chr20:43143932(-) A-I      intronic
chr20:43145177(-) A-I      intronic
chr20:43137042(-) A-I      intronic
chr20:43139220(-) A-I      intronic
chr20:43131190(-) A-I      intronic
chr20:43139719(-) A-I      intronic
chr20:43138390(-) A-I      intronic
chr20:43143211(-) A-I      intronic
chr20:43134785(-) A-I      intronic
chr20:43134000(-) A-I      intronic
chr20:43139749(-) A-I      intronic
chr20:43131411(-) A-I      intronic
chr20:43132251(-) A-I      intronic
chr20:43132172(-) A-I      intronic
chr20:43144430(-) A-I      intronic
chr20:43131504(-) A-I      intronic
chr20:43145428(-) A-I      intronic
chr20:43131336(-) A-I      intronic
chr20:43136447(-) A-I      intronic
chr20:43134319(-) A-I      intronic
chr20:43139369(-) A-I      intronic
chr20:43131414(-) A-I      intronic
chr20:43134138(-) A-I      intronic
chr20:43134492(-) A-I      intronic
chr20:43145433(-) A-I      intronic
chr20:43131407(-) A-I      intronic
chr20:43134406(-) A-I      intronic
chr20:43134423(-) A-I      intronic
chr20:43125433(-) A-I      intronic
chr20:43139366(-) A-I      intronic
chr20:43136410(-) A-I      intronic
chr20:43131451(-) A-I      intronic
chr20:43143988(-) A-I      intronic
chr20:43139723(-) A-I      intronic
chr20:43145237(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SERINC3
chr20:43131164(-) A-I intron -    22327324
chr20:43139679(-) A-I intron -    22327324
chr20:43131533(-) A-I intron -    21960545
chr20:43131156(-) A-G intron -    22484847
chr20:43131164(-) A-G intron -    22484847
chr20:43131437(-) A-G intron -    22484847
chr20:43131497(-) A-G intron -    22484847
chr20:43136410(-) A-G intron -    22484847
chr20:43137121(-) C-G intron -    22484847
chr20:43139369(-) A-G intron -    22484847
chr20:43139679(-) A-G intron -    22484847
chr20:43139723(-) A-G intron -    22484847
chr20:43139737(-) A-G intron -    22484847
chr20:43139827(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SERINC3
chr20:43124876-43124877(-) m6A 3'UTR       27773535
chr20:43124909-43124910(-) m6A 3'UTR       27773535
chr20:43126343-43126344(-) m6A 3'UTR//intron       -
chr20:43126378-43126379(-) m6A 3'UTR//intron       24981863
chr20:43126419-43126420(-) m6A 3'UTR//intron       27773535
chr20:43126430-43126431(-) m6A 3'UTR//intron       27773535
chr20:43126438-43126439(-) m6A 3'UTR//intron       27773535
chr20:43126512-43126513(-) m6A 3'UTR//intron       27773535
chr20:43127338-43127339(-) m6A 3'UTR//intron       24981863//27773535
chr20:43127397-43127398(-) m6A 3'UTR//intron       24981863//27773535
chr20:43127417-43127418(-) m6A 3'UTR//intron       24981863//27773535
chr20:43127441-43127442(-) m6A 3'UTR//intron       24981863//27773535
chr20:43127484-43127485(-) m6A 3'UTR//intron       24981863//27773535
chr20:43127555-43127556(-) m6A 3'UTR//intron       24981863//27773535
chr20:43127617-43127618(-) m6A 3'UTR//intron       24981863//27773535
chr20:43127681-43127682(-) m6A 3'UTR//intron       24981863//27773535
chr20:43127765-43127766(-) m6A 3'UTR//intron       27773535
chr20:43128763-43128764(-) m6A 3'UTR//intron       24981863
chr20:43128881-43128882(-) m6A 3'UTR//intron       24284625//24981863
chr20:43128907-43128908(-) m6A 3'UTR       24284625//24981863
chr20:43128918-43128919(-) m6A 3'UTR       24284625//24981863
chr20:43128935-43128936(-) m6A 3'UTR       24284625//24981863
chr20:43128946-43128947(-) m6A CDS       24284625//24981863
chr20:43128980-43128981(-) m6A CDS       24284625//24981863
chr20:43129807-43129808(-) Gm CDS       -
chr20:43132490-43132491(-) m6A CDS       26404942
chr20:43133445-43133446(-) m6A CDS       27773535
chr20:43133529-43133530(-) m6A CDS       27773535
chr20:43138557-43138558(-) m1A CDS       26863410

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SERINC3
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: mcpv-miR-P1-5p
Interactor2: SERINC3

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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