Basic Information:

  VIRBase ID:  

VHID00675831

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-5p:  MIMAT0010150          SAP18:  NM_005870     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-5p	SAP18
miRBase Accession/Entrez ID	MIMAT0010150	10284
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	2HOR0202//SAP18P

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SAP18	chr13:21716041(+) A-I      intronic chr13:21716675(+) A-I      intronic chr13:21716332(+) A-I      intronic chr13:21719685(+) A-I      intronic chr13:21719897(+) A-I      intronic chr13:21719744(+) A-I      intronic chr13:21716045(+) A-I      intronic chr13:21716008(+) A-I      intronic chr13:21715986(+) A-I      intronic chr13:21720253(+) A-I      intronic chr13:21720310(+) A-I      intronic chr13:21715906(+) A-I      intronic chr13:21715923(+) A-I      intronic chr13:21715945(+) A-I      intronic chr13:21715870(+) A-I      intronic chr13:21720431(+) A-I      intronic chr13:21716605(+) A-I      intronic chr13:21720406(+) A-I      intronic chr13:21716015(+) A-I      intronic chr13:21720379(+) A-I      intronic chr13:21716267(+) A-I      intronic chr13:21716621(+) A-I      intronic chr13:21716355(+) A-I      intronic chr13:21716376(+) A-I      intronic chr13:21716497(+) A-I      intronic chr13:21716566(+) A-I      intronic chr13:21720330(+) A-I      intronic chr13:21716646(+) A-I      intronic chr13:21716649(+) A-I      intronic chr13:21720328(+) A-I      intronic chr13:21720321(+) A-I      intronic chr13:21719791(+) A-I      intronic chr13:21719835(+) A-I      intronic chr13:21716688(+) A-I      intronic chr13:21716492(+) A-I      intronic chr13:21720324(+) A-I      intronic chr13:21716265(+) A-I      intronic chr13:21720325(+) A-I      intronic chr13:21716268(+) A-I      intronic chr13:21720257(+) A-I      intronic chr13:21716211(+) A-I      intronic chr13:21716266(+) A-I      intronic chr13:21718469(+) A-I      intronic chr13:21719832(+) A-I      intronic chr13:21719838(+) A-I      intronic chr13:21715972(+) A-I      intronic chr13:21716361(+) A-I      intronic chr13:21720210(+) A-I      intronic chr13:21715935(+) A-I      intronic chr13:21716080(+) A-I      intronic chr13:21718464(+) A-I      intronic chr13:21719920(+) A-I      intronic chr13:21719892(+) A-I      intronic chr13:21716328(+) A-I      intronic chr13:21716264(+) A-I      intronic chr13:21716261(+) A-I      intronic chr13:21715829(+) A-I      intronic chr13:21719839(+) A-I      intronic chr13:21716283(+) A-I      intronic chr13:21719950(+) A-I      intronic chr13:21716206(+) A-I      intronic chr13:21719677(+) A-I      intronic chr13:21720451(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SAP18	chr13:21719677(+) A-I intron -    21960545 chr13:21716332(+) A-G intron -    22484847 chr13:21716412(+) C-T intron -    22484847 chr13:21720210(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SAP18	chr13:21714680-21714681(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085 chr13:21714801-21714802(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr13:21715024-21715025(+) m6A CDS//exon       24981863 chr13:21715160-21715161(+) m6A exon//intron       - chr13:21715173-21715174(+) m6A exon//intron       - chr13:21715180-21715181(+) m6A exon//intron       - chr13:21720964-21720965(+) m6A CDS//exon//intron       27773535 chr13:21721054-21721055(+) m6A CDS//exon//intron       27773535 chr13:21721364-21721365(+) m6A 3'UTR//CDS//exon       27773535 chr13:21721419-21721420(+) m6A 3'UTR//CDS//exon       27773535 chr13:21721471-21721472(+) m6A 3'UTR//CDS//exon       27773535 chr13:21721532-21721533(+) m6A 3'UTR       27773535 chr13:21721583-21721584(+) m6A 3'UTR       27773535 chr13:21721711-21721712(+) m6A 3'UTR       27773535 chr13:21721888-21721889(+) Cm 3'UTR       - chr13:21721900-21721901(+) m6A 3'UTR       24209618 chr13:21722025-21722026(+) m6A 3'UTR       24209618//27773535 chr13:21722089-21722090(+) m6A 3'UTR       24981863//27773535 chr13:21722104-21722105(+) m6A 3'UTR       24981863//27773535 chr13:21722187-21722188(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SAP18	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-5p
Interactor2: SAP18

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg