Basic Information:

  VIRBase ID:  

VHID00674994

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-5p:  MIMAT0010150          RAP2B:  NM_002886     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-5p	RAP2B
miRBase Accession/Entrez ID	MIMAT0010150	5912
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAP2B	chr3:152880073-152880074(+) m6A 5'UTR       24209618//24981863//22575960 chr3:152880248-152880249(+) m6A 5'UTR       24209618//25456834//24981863//22575960 chr3:152880265-152880266(+) m6A 5'UTR       24209618//25456834//24981863//22575960 chr3:152880594-152880595(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr3:152880621-152880622(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr3:152880687-152880688(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:152880756-152880757(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:152880774-152880775(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr3:152880837-152880838(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr3:152880927-152880928(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr3:152880975-152880976(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr3:152881126-152881127(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr3:152881532-152881533(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:152881563-152881564(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:152881724-152881725(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:152881730-152881731(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:152882029-152882030(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr3:152882087-152882088(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr3:152882119-152882120(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr3:152882155-152882156(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr3:152882200-152882201(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RAP2B	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-5p
Interactor2: RAP2B

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg