Basic Information:

  VIRBase ID:  

VHID00674818

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-5p:  MIMAT0010150          PRDX1:  NM_181696     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-5p	PRDX1
miRBase Accession/Entrez ID	MIMAT0010150	5052
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	MSP23//NKEF-A//NKEFA//PAG//PAGA//PAGB//PRX1//PRXI//TDPX2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PRDX1	chr1:45977863(-) A-I      intronic chr1:45977869(-) A-I      intronic chr1:45977886(-) A-I      intronic chr1:45977847(-) A-I      intronic chr1:45977854(-) A-I      intronic chr1:45985393(-) A-I      intronic chr1:45985765(-) A-I      intronic chr1:45985685(-) A-I      intronic chr1:45985379(-) A-I      intronic chr1:45985825(-) A-I      intronic chr1:45985405(-) A-I      intronic chr1:45986284(-) A-I      intronic chr1:45985711(-) A-I      intronic chr1:45985755(-) A-I      intronic chr1:45985795(-) A-I      intronic chr1:45977798(-) A-I      intronic chr1:45985794(-) A-I      intronic chr1:45986493(-) A-I      intronic chr1:45985451(-) A-I      intronic chr1:45978042(-) A-I      intronic chr1:45986248(-) A-I      intronic chr1:45978154(-) A-I      intronic chr1:45985502(-) A-I      intronic chr1:45985440(-) A-I      intronic chr1:45985364(-) A-I      intronic chr1:45985295(-) A-I      intronic chr1:45985550(-) A-I      intronic chr1:45985541(-) A-I      intronic chr1:45985330(-) A-I      intronic chr1:45985432(-) A-I      intronic chr1:45985449(-) A-I      intronic chr1:45986464(-) A-I      intronic chr1:45978021(-) A-I      intronic chr1:45977926(-) A-I      intronic chr1:45985486(-) A-I      intronic chr1:45985477(-) A-I      intronic chr1:45985365(-) A-I      intronic chr1:45985634(-) A-I      intronic chr1:45985497(-) A-I      intronic chr1:45985635(-) A-I      intronic chr1:45985396(-) A-I      intronic chr1:45978084(-) A-I      intronic chr1:45977927(-) A-I      intronic chr1:45978159(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PRDX1	chr1:45977750(-) A-G intron -    22484847 chr1:45977838(-) T-C intron -    22484847 chr1:45977858(-) T-C intron -    22484847 chr1:45985364(-) A-G intron -    22484847 chr1:45985365(-) A-G intron -    22484847 chr1:45985449(-) A-G intron -    22484847 chr1:45985477(-) A-G intron -    22484847 chr1:45985755(-) A-G intron -    22484847 chr1:45985794(-) A-G intron -    22484847 chr1:45985795(-) A-G intron -    22484847 chr1:45985825(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PRDX1	chr1:45976846-45976847(-) m6A 3'UTR       27773535 chr1:45980607-45980608(-) m6A CDS//intron       26404942//22575960 chr1:45980610-45980611(-) Cm CDS//intron       - chr1:45980625-45980626(-) m6A CDS//intron       26404942//22575960 chr1:45980633-45980634(-) m6A CDS//intron       26404942//22575960 chr1:45980639-45980640(-) m6A CDS//intron       26404942//22575960 chr1:45980648-45980649(-) m6A CDS//intron       26404942//22575960 chr1:45988545-45988546(-) m6A 5'UTR       24981863 chr1:45988609-45988610(-) m6A 5'UTR       24981863 chr1:45988632-45988633(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PRDX1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HeLa-S3 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-5p
Interactor2: PRDX1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg