Basic Information:

  VIRBase ID:  

VHID00674367

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-5p:  MIMAT0010150          FGB:  NM_001184741     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-5p	FGB
miRBase Accession/Entrez ID	MIMAT0010150	2244
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	HEL-S-78p

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FGB	chr4:155492401(+) A-I      3'UTR chr4:155492392(+) A-I      3'UTR chr4:155492398(+) A-I      3'UTR chr4:155492400(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FGB	chr4:155484127-155484128(+) m6A 5'UTR       24981863//27773535 chr4:155484202-155484203(+) m6A 5'UTR//CDS//exon       24981863//26404942//27773535 chr4:155484209-155484210(+) m6A 5'UTR//CDS//exon       24981863//26404942//27773535 chr4:155484217-155484218(+) m6A 5'UTR//CDS//exon       24981863//26404942//27773535 chr4:155486345-155486346(+) m6A CDS//exon//intron       24981863//27773535 chr4:155486409-155486410(+) m6A exon//intron       27773535 chr4:155487146-155487147(+) m6A 3'UTR//CDS//exon//intron       27773535 chr4:155487751-155487752(+) m6A 3'UTR//CDS//exon//intron       27773535 chr4:155487791-155487792(+) m6A 3'UTR//CDS//exon//intron       27773535 chr4:155487871-155487872(+) m6A exon//intron       24981863//27773535 chr4:155487879-155487880(+) m6A exon//intron       24981863//27773535 chr4:155488778-155488779(+) m6A 5'UTR//CDS//exon       27773535 chr4:155488809-155488810(+) m6A 5'UTR//CDS//exon       27773535 chr4:155488864-155488865(+) m6A 5'UTR//CDS//exon       27773535 chr4:155488987-155488988(+) m6A exon//intron       27773535 chr4:155489564-155489565(+) m6A CDS//exon       27773535 chr4:155489605-155489606(+) m6A CDS//exon       24981863//27773535 chr4:155490338-155490339(+) m6A CDS//exon       24981863//27773535 chr4:155490351-155490352(+) m6A CDS//exon       24981863//27773535 chr4:155490400-155490401(+) m6A CDS//exon       24981863//27773535 chr4:155490714-155490715(+) m6A CDS//intron       24981863//27773535 chr4:155490723-155490724(+) m6A CDS//intron       24981863//27773535 chr4:155490743-155490744(+) m6A CDS//intron       24981863//27773535 chr4:155490755-155490756(+) m6A CDS//intron       24981863//27773535 chr4:155490824-155490825(+) m6A CDS//intron       24981863//27773535 chr4:155490838-155490839(+) m6A CDS//intron       24981863//27773535 chr4:155490887-155490888(+) m6A CDS//intron       24981863//27773535 chr4:155490892-155490893(+) m6A CDS//intron       24981863//27773535 chr4:155490938-155490939(+) m6A CDS//intron       24981863//27773535 chr4:155491591-155491592(+) m6A CDS//exon       24981863//27773535 chr4:155491675-155491676(+) m6A CDS//exon       24981863//26404942//27773535 chr4:155491689-155491690(+) m6A CDS//exon       24981863//26404942//27773535 chr4:155491896-155491897(+) m6A 3'UTR//exon       27773535 chr4:155492113-155492114(+) m6A 3'UTR       27773535 chr4:155492132-155492133(+) m6A 3'UTR       27773535 chr4:155492159-155492160(+) m6A 3'UTR       27773535 chr4:155492193-155492194(+) m6A 3'UTR       27773535 chr4:155492218-155492219(+) m6A 3'UTR       27773535 chr4:155492223-155492224(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FGB	Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-5p
Interactor2: FGB

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg