Basic Information:

  VIRBase ID:  

VHID00674034

  Virus:  

Merkel cell polyomavirus

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcpv-miR-P1-5p:  MIMAT0010150          ARHGDIB:  NR_135637     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcpv-miR-P1-5p	ARHGDIB
miRBase Accession/Entrez ID	MIMAT0010150	397
Organism	Merkel cell polyomavirus	Homo sapiens
Category	miRNA	mRNA
Alias	-	D4//GDIA2//GDID4//Ly-GDI//LYGDI//RAP1GN1//RhoGDI2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARHGDIB	chr12:15107838(-) A-I      intronic chr12:15107822(-) A-I      intronic chr12:15107821(-) A-I      intronic chr12:15112136(-) A-I      intronic chr12:15113674(-) A-I      intronic chr12:15112132(-) A-I      intronic chr12:15112131(-) A-I      intronic chr12:15112108(-) A-I      intronic chr12:15112096(-) A-I      intronic chr12:15112199(-) A-I      intronic chr12:15112240(-) A-I      intronic chr12:15112135(-) A-I      intronic chr12:15112187(-) A-I      intronic chr12:15112190(-) A-I      intronic chr12:15112204(-) A-I      intronic chr12:15107826(-) A-I      intronic chr12:15106925(-) A-I      intronic chr12:15107835(-) A-I      intronic chr12:15107818(-) A-I      intronic chr12:15108520(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ARHGDIB	chr12:15107826(-) A-G intron -    22484847 chr12:15107835(-) A-G intron -    22484847 chr12:15108520(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARHGDIB	chr12:15094975-15094976(-) m6A 3'UTR       27773535 chr12:15094986-15094987(-) m6A 3'UTR       27773535 chr12:15095008-15095009(-) m6A 3'UTR       27773535 chr12:15095276-15095277(-) m6A 3'UTR       27773535 chr12:15095290-15095291(-) m6A 3'UTR       27773535 chr12:15095463-15095464(-) m6A CDS//exon       26404942//27773535 chr12:15095486-15095487(-) m6A CDS//exon       26404942//27773535 chr12:15095507-15095508(-) m6A CDS//exon       26404942//27773535 chr12:15101758-15101759(-) m6A exon//intron       24981863 chr12:15101778-15101779(-) m6A exon//intron       24981863 chr12:15102743-15102744(-) m6A CDS//exon       24981863 chr12:15102757-15102758(-) m6A CDS//exon       24981863 chr12:15103530-15103531(-) m6A CDS//exon       24981863//28052920//26404942//27371828 chr12:15103590-15103591(-) m6A CDS//exon       24981863//28052920//26404942//27371828 chr12:15114182-15114183(-) m6A 5'UTR//intron       24981863 chr12:15114491-15114492(-) m6A 5'UTR//exon//intron       24981863 chr12:15114506-15114507(-) m6A 5'UTR//exon//intron       24981863 chr12:15114573-15114574(-) m6A 5'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARHGDIB	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: mcpv-miR-P1-5p
Interactor2: ARHGDIB

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg