Detail Information

Basic Information:


  VIRBase ID:  

VHID00673464

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-3p:           ZNF569:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-3p ZNF569
miRBase
Accession/Entrez ID		 MIMAT0009148 148266
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - ZAP1//Zfp74//ZNF

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF569
chr19:37952276(-) A-I      intronic
chr19:37952277(-) A-I      intronic
chr19:37952281(-) A-I      intronic
chr19:37952291(-) A-I      intronic
chr19:37952271(-) A-I      intronic
chr19:37919348(-) A-I      intronic
chr19:37919669(-) A-I      intronic
chr19:37919688(-) A-I      intronic
chr19:37919854(-) A-I      intronic
chr19:37924070(-) A-I      intronic
chr19:37924091(-) A-I      intronic
chr19:37930040(-) A-I      intronic
chr19:37930041(-) A-I      intronic
chr19:37930049(-) A-I      intronic
chr19:37930084(-) A-I      intronic
chr19:37930142(-) A-I      intronic
chr19:37930176(-) A-I      intronic
chr19:37939694(-) A-I      intronic
chr19:37947754(-) A-I      intronic
chr19:37947770(-) A-I      intronic
chr19:37947787(-) A-I      intronic
chr19:37947819(-) A-I      intronic
chr19:37951143(-) A-I      intronic
chr19:37951147(-) A-I      intronic
chr19:37911163(-) A-I      intronic
chr19:37906900(-) A-I      intronic
chr19:37906918(-) A-I      intronic
chr19:37908418(-) A-I      intronic
chr19:37911091(-) A-I      intronic
chr19:37911093(-) A-I      intronic
chr19:37911162(-) A-I      intronic
chr19:37911179(-) A-I      intronic
chr19:37912868(-) A-I      intronic
chr19:37912870(-) A-I      intronic
chr19:37912871(-) A-I      intronic
chr19:37915472(-) A-I      intronic
chr19:37915766(-) A-I      intronic
chr19:37915779(-) A-I      intronic
chr19:37915780(-) A-I      intronic
chr19:37916562(-) A-I      intronic
chr19:37916568(-) A-I      intronic
chr19:37919660(-) A-I      intronic
chr19:37947636(-) A-I      intronic
chr19:37951199(-) A-I      intronic
chr19:37915618(-) A-I      intronic
chr19:37920884(-) A-I      intronic
chr19:37919831(-) A-I      intronic
chr19:37915634(-) A-I      intronic
chr19:37951182(-) A-I      intronic
chr19:37915570(-) A-I      intronic
chr19:37915882(-) A-I      intronic
chr19:37915553(-) A-I      intronic
chr19:37916539(-) A-I      intronic
chr19:37907102(-) A-I      intronic
chr19:37916146(-) A-I      intronic
chr19:37952428(-) A-I      intronic
chr19:37916452(-) A-I      intronic
chr19:37919315(-) A-I      intronic
chr19:37915910(-) A-I      intronic
chr19:37929126(-) A-I      intronic
chr19:37951148(-) A-I      intronic
chr19:37939702(-) A-I      intronic
chr19:37915635(-) A-I      intronic
chr19:37910367(-) A-I      intronic
chr19:37952456(-) A-I      intronic
chr19:37952365(-) A-I      intronic
chr19:37916646(-) A-I      intronic
chr19:37951581(-) A-I      intronic
chr19:37924068(-) A-I      intronic
chr19:37934044(-) A-I      intronic
chr19:37939699(-) A-I      intronic
chr19:37919406(-) A-I      intronic
chr19:37915985(-) A-I      intronic
chr19:37911053(-) A-I      intronic
chr19:37951574(-) A-I      intronic
chr19:37916642(-) A-I      intronic
chr19:37916512(-) A-I      intronic
chr19:37916622(-) A-I      intronic
chr19:37934652(-) A-I      intronic
chr19:37947703(-) A-I      intronic
chr19:37920923(-) A-I      intronic
chr19:37924062(-) A-I      intronic
chr19:37915945(-) A-I      intronic
chr19:37916132(-) A-I      intronic
chr19:37911058(-) A-I      intronic
chr19:37908446(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF569
chr19:37902180-37902181(-) m6A 3'UTR       27773535
chr19:37902223-37902224(-) m6A 3'UTR       27773535
chr19:37903715-37903716(-) Y CDS       26075521
chr19:37904866-37904867(-) m6A CDS       24981863//27773535
chr19:37904875-37904876(-) m6A CDS       24981863//27773535
chr19:37904950-37904951(-) m6A CDS       24981863//27773535
chr19:37904960-37904961(-) m6A CDS       24981863//27773535
chr19:37904967-37904968(-) m6A CDS       24981863//27773535
chr19:37905052-37905053(-) m6A CDS       27773535//22608085
chr19:37905118-37905119(-) m6A 3'UTR//5'UTR//CDS       24981863//27773535//22608085
chr19:37905160-37905161(-) m6A 3'UTR//5'UTR//CDS       24981863//27773535//22608085
chr19:37905182-37905183(-) m6A 3'UTR//5'UTR//CDS       24981863//27773535//22608085
chr19:37905243-37905244(-) m6A 3'UTR//5'UTR//CDS       24981863//27773535
chr19:37905268-37905269(-) m6A 3'UTR//5'UTR//CDS       24981863//27773535
chr19:37905281-37905282(-) m6A 5'UTR//CDS       24981863//27773535
chr19:37905287-37905288(-) m6A 5'UTR//CDS       24981863//27773535
chr19:37916559-37916560(-) m6A 3'UTR//intron       24981863//27773535
chr19:37916582-37916583(-) m6A 3'UTR//intron       24981863//27773535
chr19:37916779-37916780(-) m6A CDS//intron       27773535
chr19:37916812-37916813(-) m6A CDS//intron       27773535
chr19:37916848-37916849(-) m6A CDS//intron       27773535
chr19:37917176-37917177(-) m6A CDS//intron       27773535
chr19:37917202-37917203(-) m6A CDS//intron       27773535
chr19:37945866-37945867(-) m6A 5'UTR//intron       27773535
chr19:37945892-37945893(-) m6A 5'UTR//intron       27773535
chr19:37945918-37945919(-) m6A 5'UTR//intron       27773535
chr19:37945925-37945926(-) m6A 5'UTR//intron       27773535
chr19:37945953-37945954(-) m6A 5'UTR//intron       27773535
chr19:37945966-37945967(-) m6A 5'UTR//intron       27773535
chr19:37956218-37956219(-) m6A 5'UTR//exon//intron       27773535
chr19:37956268-37956269(-) m6A 5'UTR//exon//intron       27773535
chr19:37956275-37956276(-) m6A 5'UTR//exon//intron       27773535
chr19:37958182-37958183(-) m6A 5'UTR//intron       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-3p
Nucleus PML tissue     32324824
ZNF569
Chromatin K562 cells     -
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-3p
Interactor2: ZNF569

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...