Basic Information:

  VIRBase ID:  

VHID00672880

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-3p:  MIMAT0009148          ZDBF2:  NM_001369654     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-3p	ZDBF2
miRBase Accession/Entrez ID	MIMAT0009148	57683
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Slx9

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZDBF2	chr2:207163741(+) A-I      intronic chr2:207144646(+) A-I      intronic chr2:207164162(+) A-I      intronic chr2:207164269(+) A-I      intronic chr2:207164679(+) A-I      intronic chr2:207164722(+) A-I      intronic chr2:207164813(+) A-I      intronic chr2:207163365(+) A-I      intronic chr2:207163387(+) A-I      intronic chr2:207163389(+) A-I      intronic chr2:207163433(+) A-I      intronic chr2:207163515(+) A-I      intronic chr2:207163524(+) A-I      intronic chr2:207163628(+) A-I      intronic chr2:207163805(+) A-I      intronic chr2:207177390(+) A-I      3'UTR chr2:207177360(+) A-I      3'UTR chr2:207164140(+) A-I      intronic chr2:207164275(+) A-I      intronic chr2:207164285(+) A-I      intronic chr2:207164180(+) A-I      intronic chr2:207164670(+) A-I      intronic chr2:207164823(+) A-I      intronic chr2:207164185(+) A-I      intronic chr2:207164234(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ZDBF2	chr2:207164140(+) A-G intron -    22484847 chr2:207164180(+) A-G intron -    22484847 chr2:207164231(+) A-G intron -    22484847 chr2:207164234(+) A-G intron -    22484847 chr2:207164275(+) A-G intron -    22484847 chr2:207164285(+) A-G intron -    22484847 chr2:207164670(+) A-G intron -    22484847 chr2:207164694(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZDBF2	chr2:207169569-207169570(+) m6A CDS       24284625//24981863//22608085 chr2:207169587-207169588(+) m6A CDS       24284625//24981863//22608085 chr2:207169611-207169612(+) m6A CDS       24284625//24981863//22608085 chr2:207169671-207169672(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:207169683-207169684(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:207169845-207169846(+) m6A CDS       24284625//24981863//22608085 chr2:207169916-207169917(+) m6A CDS       24284625//22608085 chr2:207169938-207169939(+) m6A CDS       24284625//24981863//22608085 chr2:207169987-207169988(+) m6A CDS       24284625//24981863//22608085 chr2:207170010-207170011(+) m6A CDS       24284625//24981863//22608085 chr2:207170092-207170093(+) m6A CDS       24284625//24981863//22608085 chr2:207170177-207170178(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:207170188-207170189(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:207170237-207170238(+) m6A CDS       24981863//22608085 chr2:207170302-207170303(+) m6A CDS       24981863//22608085 chr2:207170316-207170317(+) m6A CDS       22608085 chr2:207170392-207170393(+) m6A CDS       24981863//22608085 chr2:207170402-207170403(+) m6A CDS       24981863//22608085 chr2:207170537-207170538(+) m6A CDS       24981863//22608085 chr2:207170801-207170802(+) m6A CDS       22608085 chr2:207170840-207170841(+) m6A CDS       22608085 chr2:207170907-207170908(+) m6A CDS       22608085 chr2:207170929-207170930(+) m6A CDS       22608085 chr2:207170934-207170935(+) m6A CDS       22608085 chr2:207170992-207170993(+) m6A CDS       22608085 chr2:207171062-207171063(+) m6A CDS       24284625//24981863//22608085 chr2:207171075-207171076(+) m6A CDS       24284625//24981863//22608085 chr2:207171090-207171091(+) m6A CDS       24284625//24981863//22608085 chr2:207171105-207171106(+) m6A CDS       24284625//24981863//22608085 chr2:207171151-207171152(+) m6A CDS       24284625//24981863//22608085 chr2:207171230-207171231(+) m6A CDS       24284625//24981863//22608085 chr2:207171691-207171692(+) m6A CDS       24981863//22608085 chr2:207171849-207171850(+) m6A CDS       24981863//22608085 chr2:207171981-207171982(+) m6A CDS       24981863//22608085 chr2:207172117-207172118(+) m6A CDS       24284625//24981863//22608085 chr2:207172161-207172162(+) m6A CDS       24284625//24981863//22608085 chr2:207172183-207172184(+) m6A CDS       24981863//22608085 chr2:207172249-207172250(+) m6A CDS       24284625//24981863//22608085 chr2:207172290-207172291(+) m6A CDS       24981863//22608085 chr2:207172316-207172317(+) m6A CDS       24284625//24981863//22608085 chr2:207172343-207172344(+) m6A CDS       24284625//24981863//22608085 chr2:207172443-207172444(+) m6A CDS       24284625//24981863//22608085 chr2:207172460-207172461(+) m6A CDS       24284625//24981863//22608085 chr2:207172466-207172467(+) m6A CDS       24284625//24981863//22608085 chr2:207172506-207172507(+) m6A CDS       24284625//24981863//22608085 chr2:207172535-207172536(+) m6A CDS       24284625//24981863//22608085 chr2:207172581-207172582(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:207172659-207172660(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr2:207172667-207172668(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr2:207172682-207172683(+) m6A CDS       24284625//24981863//22575960//22608085 chr2:207172706-207172707(+) m6A CDS       24284625//24981863//22575960//22608085 chr2:207172809-207172810(+) m6A CDS       24284625//24981863//22608085 chr2:207172900-207172901(+) m6A CDS       22608085 chr2:207173088-207173089(+) m6A CDS       24981863//22608085 chr2:207173124-207173125(+) m6A CDS       24981863//22608085 chr2:207173190-207173191(+) m6A CDS       22608085 chr2:207173277-207173278(+) m6A CDS       22608085 chr2:207173400-207173401(+) m6A CDS       22608085 chr2:207173432-207173433(+) m6A CDS       22608085 chr2:207173549-207173550(+) m6A CDS       24981863//22608085 chr2:207173588-207173589(+) m6A CDS       24981863//22608085 chr2:207173681-207173682(+) m6A CDS       22608085 chr2:207173719-207173720(+) m6A CDS       22608085 chr2:207174035-207174036(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:207174049-207174050(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:207174065-207174066(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:207174077-207174078(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:207174177-207174178(+) m6A CDS       24981863//22608085 chr2:207174263-207174264(+) m6A CDS       22608085 chr2:207174450-207174451(+) m6A CDS       24981863//22608085 chr2:207174477-207174478(+) m6A CDS       24981863//22608085 chr2:207174547-207174548(+) m6A CDS       24284625//24981863//22608085 chr2:207174561-207174562(+) m6A CDS       24284625//24981863//22608085 chr2:207174602-207174603(+) m6A CDS       24284625//24981863//22608085 chr2:207174650-207174651(+) m6A CDS       24981863//22608085 chr2:207174693-207174694(+) m6A CDS       24981863//22608085 chr2:207174742-207174743(+) m6A CDS       24981863//22608085 chr2:207174844-207174845(+) m6A CDS       24284625//24981863//22608085 chr2:207174908-207174909(+) m6A CDS       24284625//25456834//24981863//22608085 chr2:207174996-207174997(+) m6A CDS       24284625//24981863//22608085 chr2:207175066-207175067(+) m6A CDS       24284625//24981863//27773535//22608085 chr2:207175093-207175094(+) m6A CDS       24284625//24981863//27773535//22608085 chr2:207175137-207175138(+) m6A CDS       24284625//24981863//22608085 chr2:207175148-207175149(+) m6A CDS       24284625//24981863//22608085 chr2:207175192-207175193(+) m6A CDS       24284625//24981863//22608085 chr2:207175216-207175217(+) m6A CDS       24284625//24981863//22608085 chr2:207175305-207175306(+) m6A CDS       24284625//24981863//22608085 chr2:207175517-207175518(+) m6A CDS       22608085 chr2:207175548-207175549(+) m6A CDS       24981863//22608085 chr2:207175615-207175616(+) m6A CDS       24981863//22608085 chr2:207175839-207175840(+) m6A CDS       24209618//24981863//22608085 chr2:207175860-207175861(+) m6A CDS       24209618//24981863//22608085 chr2:207175881-207175882(+) m6A CDS       24209618//24981863//22608085 chr2:207175900-207175901(+) m6A CDS       24209618//24981863//22608085 chr2:207175905-207175906(+) m6A CDS       24209618//24981863//22608085 chr2:207176044-207176045(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr2:207176063-207176064(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr2:207176173-207176174(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr2:207176288-207176289(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr2:207176414-207176415(+) m6A 3'UTR       22608085 chr2:207176425-207176426(+) m6A 3'UTR       22608085 chr2:207177274-207177275(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-3p	Nucleus PML tissue     32324824
	ZDBF2	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-3p
Interactor2: ZDBF2

Evidence Support:

Prediction-Evidence	cRep//Targetscan
Support Database	RepTar//VmiReg