Basic Information:

  VIRBase ID:  

VHID00672802

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-3p:  MIMAT0009148          BBX:  NM_020235     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-3p	BBX
miRBase Accession/Entrez ID	MIMAT0009148	56987
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARTC1//HBP2//HSPC339//MDS001

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BBX	chr3:107345576(+) A-I      intronic chr3:107345581(+) A-I      intronic chr3:107345582(+) A-I      intronic chr3:107345571(+) A-I      intronic chr3:107356861(+) A-I      intronic chr3:107292675(+) A-I      intronic chr3:107292674(+) A-I      intronic chr3:107292654(+) A-I      intronic chr3:107292345(+) A-I      intronic chr3:107292323(+) A-I      intronic chr3:107292304(+) A-I      intronic chr3:107284865(+) A-I      intronic chr3:107284863(+) A-I      intronic chr3:107284845(+) A-I      intronic chr3:107284835(+) A-I      intronic chr3:107284766(+) A-I      intronic chr3:107284558(+) A-I      intronic chr3:107284382(+) A-I      intronic chr3:107278825(+) A-I      intronic chr3:107278781(+) A-I      intronic chr3:107278718(+) A-I      intronic chr3:107277285(+) A-I      intronic chr3:107278800(+) A-I      intronic chr3:107425011(+) A-I      intronic chr3:107417420(+) A-I      intronic chr3:107417392(+) A-I      intronic chr3:107409770(+) A-I      intronic chr3:107409769(+) A-I      intronic chr3:107406791(+) A-I      intronic chr3:107406787(+) A-I      intronic chr3:107406782(+) A-I      intronic chr3:107406781(+) A-I      intronic chr3:107374713(+) A-I      intronic chr3:107374687(+) A-I      intronic chr3:107360115(+) A-I      intronic chr3:107360112(+) A-I      intronic chr3:107360071(+) A-I      intronic chr3:107359953(+) A-I      intronic chr3:107359626(+) A-I      intronic chr3:107359609(+) A-I      intronic chr3:107357162(+) A-I      intronic chr3:107357122(+) A-I      intronic chr3:107357038(+) A-I      intronic chr3:107345641(+) A-I      intronic chr3:107345632(+) A-I      intronic chr3:107345631(+) A-I      intronic chr3:107344280(+) A-I      intronic chr3:107344264(+) A-I      intronic chr3:107344254(+) A-I      intronic chr3:107343661(+) A-I      intronic chr3:107322365(+) A-I      intronic chr3:107321928(+) A-I      intronic chr3:107321300(+) A-I      intronic chr3:107311229(+) A-I      intronic chr3:107311158(+) A-I      intronic chr3:107310359(+) A-I      intronic chr3:107306115(+) A-I      intronic chr3:107306114(+) A-I      intronic chr3:107306037(+) A-I      intronic chr3:107306033(+) A-I      intronic chr3:107305785(+) A-I      intronic chr3:107305784(+) A-I      intronic chr3:107305698(+) A-I      intronic chr3:107305697(+) A-I      intronic chr3:107294763(+) A-I      intronic chr3:107292713(+) A-I      intronic chr3:107292691(+) A-I      intronic chr3:107292677(+) A-I      intronic chr3:107303729(+) A-I      intronic chr3:107357715(+) A-I      intronic chr3:107284381(+) A-I      intronic chr3:107278739(+) A-I      intronic chr3:107310402(+) A-I      intronic chr3:107294824(+) A-I      intronic chr3:107277214(+) A-I      intronic chr3:107284859(+) A-I      intronic chr3:107306144(+) A-I      intronic chr3:107432846(+) A-I      intronic chr3:107263597(+) A-I      intronic chr3:107321327(+) A-I      intronic chr3:107284943(+) A-I      intronic chr3:107303608(+) A-I      intronic chr3:107417363(+) A-I      intronic chr3:107306063(+) A-I      intronic chr3:107310366(+) A-I      intronic chr3:107356801(+) A-I      intronic chr3:107425012(+) A-I      intronic chr3:107305737(+) A-I      intronic chr3:107321382(+) A-I      intronic chr3:107311077(+) A-I      intronic chr3:107310355(+) A-I      intronic chr3:107356806(+) A-I      intronic chr3:107295740(+) A-I      intronic chr3:107321307(+) A-I      intronic chr3:107284491(+) A-I      intronic chr3:107357738(+) A-I      intronic chr3:107284879(+) A-I      intronic chr3:107284860(+) A-I      intronic chr3:107278826(+) A-I      intronic chr3:107263459(+) A-I      intronic chr3:107277158(+) A-I      intronic chr3:107322245(+) A-I      intronic chr3:107306109(+) A-I      intronic chr3:107417333(+) A-I      intronic chr3:107284901(+) A-I      intronic chr3:107284875(+) A-I      intronic chr3:107277179(+) A-I      intronic chr3:107292281(+) A-I      intronic chr3:107306149(+) A-I      intronic chr3:107284446(+) A-I      intronic chr3:107277284(+) A-I      intronic chr3:107278765(+) A-I      intronic chr3:107306146(+) A-I      intronic chr3:107249174(+) A-I      intronic chr3:107424902(+) A-I      intronic chr3:107321328(+) A-I      intronic chr3:107284902(+) A-I      intronic chr3:107284497(+) A-I      intronic chr3:107284820(+) A-I      intronic chr3:107357564(+) A-I      intronic chr3:107306126(+) A-I      intronic chr3:107321304(+) A-I      intronic chr3:107292834(+) A-I      intronic chr3:107278834(+) A-I      intronic chr3:107385584(+) A-I      intronic chr3:107284500(+) A-I      intronic chr3:107294740(+) A-I      intronic chr3:107311183(+) A-I      intronic chr3:107321830(+) A-I      intronic chr3:107424947(+) A-I      intronic chr3:107425060(+) A-I      intronic chr3:107278659(+) A-I      intronic chr3:107345703(+) A-I      intronic chr3:107409887(+) A-I      intronic chr3:107284411(+) A-I      intronic chr3:107425057(+) A-I      intronic chr3:107278669(+) A-I      intronic chr3:107278829(+) A-I      intronic chr3:107260783(+) A-I      intronic chr3:107424969(+) A-I      intronic chr3:107306072(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	BBX	chr3:107321307(+) A-I intron -    22327324 chr3:107277158(+) A-G intron -    22484847 chr3:107277284(+) A-G intron -    22484847 chr3:107278609(+) A-G intron -    22484847 chr3:107278610(+) A-G intron -    22484847 chr3:107278651(+) A-G intron -    22484847 chr3:107278659(+) A-G intron -    22484847 chr3:107278669(+) A-G intron -    22484847 chr3:107278829(+) A-G intron -    22484847 chr3:107278834(+) A-G intron -    22484847 chr3:107284381(+) A-G intron -    22484847 chr3:107284446(+) A-G intron -    22484847 chr3:107284456(+) A-G intron -    22484847 chr3:107284859(+) A-G intron -    22484847 chr3:107284977(+) G-C intron -    22484847 chr3:107285022(+) C-G intron -    22484847 chr3:107287175(+) A-G intron -    22484847 chr3:107292772(+) A-G intron -    22484847 chr3:107292834(+) A-G intron -    22484847 chr3:107294740(+) A-G intron -    22484847 chr3:107294824(+) A-G intron -    22484847 chr3:107303608(+) A-G intron -    22484847 chr3:107305737(+) A-G intron -    22484847 chr3:107306072(+) A-G intron -    22484847 chr3:107306109(+) A-G intron -    22484847 chr3:107306126(+) A-G intron -    22484847 chr3:107310366(+) A-G intron -    22484847 chr3:107321304(+) A-G intron -    22484847 chr3:107321306(+) A-G intron -    22484847 chr3:107321307(+) A-G intron -    22484847 chr3:107321327(+) A-G intron -    22484847 chr3:107321328(+) A-G intron -    22484847 chr3:107321830(+) A-G intron -    22484847 chr3:107321832(+) A-G intron -    22484847 chr3:107322245(+) A-G intron -    22484847 chr3:107343641(+) G-A intron -    22484847 chr3:107350940(+) T-A intron -    22484847 chr3:107350941(+) T-G intron -    22484847 chr3:107350942(+) G-A intron -    22484847 chr3:107356801(+) A-G intron -    22484847 chr3:107356806(+) A-G intron -    22484847 chr3:107409887(+) A-G intron -    22484847 chr3:107417481(+) A-G intron -    22484847 chr3:107424902(+) A-G intron -    22484847 chr3:107424969(+) A-G intron -    22484847 chr3:107425012(+) A-G intron -    22484847 chr3:107425054(+) A-G intron -    22484847 chr3:107425057(+) A-G intron -    22484847 chr3:107425060(+) A-G intron -    22484847 chr3:107427441(+) A-G intron -    22484847 chr3:107433687(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BBX	chr3:107241893-107241894(+) m6A 5'UTR//exon       24981863 chr3:107435498-107435499(+) m6A CDS//exon//intron       - chr3:107435536-107435537(+) m6A CDS//exon//intron       - chr3:107435593-107435594(+) m6A CDS//exon//intron       - chr3:107491600-107491601(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr3:107491609-107491610(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr3:107491901-107491902(+) m6A CDS//intron       24981863//22608085 chr3:107491981-107491982(+) m6A CDS//intron       24981863//27773535//22608085 chr3:107492057-107492058(+) m6A CDS//intron       24981863//27773535//22608085 chr3:107492073-107492074(+) m6A CDS//intron       24209618//24981863//27773535//22608085 chr3:107492201-107492202(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr3:107492220-107492221(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr3:107492255-107492256(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr3:107492269-107492270(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr3:107492292-107492293(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr3:107492337-107492338(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:107492354-107492355(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:107492380-107492381(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr3:107492431-107492432(+) m6A CDS//intron       24284625//24209618//24981863//26404942//22608085 chr3:107493589-107493590(+) m6A CDS       24209618//24981863 chr3:107493630-107493631(+) m6A CDS       24981863 chr3:107493648-107493649(+) m6A CDS       24981863 chr3:107493675-107493676(+) m6A CDS       24981863 chr3:107493691-107493692(+) m6A CDS       24981863 chr3:107495103-107495104(+) m6A exon//intron       24981863 chr3:107495148-107495149(+) m6A exon//intron       24981863 chr3:107495162-107495163(+) m6A exon//intron       24981863 chr3:107497326-107497327(+) m6A CDS//exon       24981863 chr3:107497346-107497347(+) m6A CDS//exon       24981863 chr3:107497356-107497357(+) m6A CDS//exon       24981863 chr3:107508657-107508658(+) m6A CDS//exon//intron       24981863 chr3:107517466-107517467(+) m6A CDS//exon       24981863 chr3:107517503-107517504(+) m6A CDS//exon       24209618//24981863 chr3:107517527-107517528(+) m6A CDS       24209618//24981863 chr3:107519948-107519949(+) m6A CDS       24209618//24981863//22608085 chr3:107519957-107519958(+) m6A CDS       24209618//24981863//22608085 chr3:107519991-107519992(+) m6A CDS       24209618//24981863//22608085 chr3:107520024-107520025(+) Gm CDS       - chr3:107524249-107524250(+) m6A CDS       24284625//24209618//24981863//22575960 chr3:107524323-107524324(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960 chr3:107524399-107524400(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr3:107524406-107524407(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr3:107524484-107524485(+) m6A 3'UTR       24284625//22608085 chr3:107524531-107524532(+) m6A 3'UTR       24284625 chr3:107525187-107525188(+) m6A 3'UTR       24981863//22608085 chr3:107525199-107525200(+) m6A 3'UTR       24981863//22608085 chr3:107525247-107525248(+) m6A 3'UTR       24981863//22608085 chr3:107525258-107525259(+) m6A 3'UTR       24981863//22608085 chr3:107525275-107525276(+) m6A 3'UTR       24981863//22608085 chr3:107525289-107525290(+) m6A 3'UTR       24981863//22608085 chr3:107528013-107528014(+) m6A 3'UTR       24284625//24981863//22608085 chr3:107528030-107528031(+) m6A 3'UTR       24284625//24981863//22608085 chr3:107528084-107528085(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr3:107528129-107528130(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr3:107528146-107528147(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr3:107528489-107528490(+) m6A 3'UTR       24284625//24981863//22608085 chr3:107528508-107528509(+) m6A 3'UTR       24284625//24981863//22608085 chr3:107528601-107528602(+) m6A 3'UTR       24284625//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-3p	Nucleus PML tissue     32324824
	BBX	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-3p
Interactor2: BBX

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg