Basic Information:

  VIRBase ID:  

VHID00672201

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-3p:  MIMAT0009148          RAB11FIP2:  NM_014904     

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Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-3p	RAB11FIP2
miRBase Accession/Entrez ID	MIMAT0009148	22841
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	nRip11//Rab11-FIP2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RAB11FIP2	chr10:119776622(-) A-I      intronic chr10:119776638(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAB11FIP2	chr10:119765259-119765260(-) m6A 3'UTR       24981863 chr10:119765266-119765267(-) m6A 3'UTR//exon       24981863 chr10:119765376-119765377(-) m6A 3'UTR//intron       24981863//27773535 chr10:119765396-119765397(-) m6A 3'UTR//intron       27773535 chr10:119765407-119765408(-) m6A 3'UTR//intron       27773535 chr10:119767400-119767401(-) m6A 3'UTR//intron       24981863 chr10:119767411-119767412(-) m6A 3'UTR//intron       24981863 chr10:119768259-119768260(-) m6A 3'UTR//intron       27773535 chr10:119768351-119768352(-) m6A 3'UTR//intron       24981863//27773535//22608085 chr10:119768424-119768425(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr10:119768441-119768442(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr10:119768477-119768478(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//27371828//22608085 chr10:119768544-119768545(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr10:119768611-119768612(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr10:119768619-119768620(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr10:119768635-119768636(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr10:119768652-119768653(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr10:119768661-119768662(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr10:119774591-119774592(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr10:119798554-119798555(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr10:119798625-119798626(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr10:119798724-119798725(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr10:119798749-119798750(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr10:119798756-119798757(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr10:119798850-119798851(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085 chr10:119798896-119798897(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085 chr10:119798924-119798925(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr10:119799648-119799649(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr10:119799670-119799671(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr10:119799684-119799685(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr10:119799709-119799710(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr10:119799799-119799800(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr10:119799894-119799895(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr10:119799951-119799952(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:119799956-119799957(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:119799995-119799996(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr10:119800034-119800035(-) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr10:119800054-119800055(-) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr10:119805325-119805326(-) m6A CDS       24284625//24981863//27773535//22608085 chr10:119805342-119805343(-) m6A CDS       24981863//27773535//22608085 chr10:119805866-119805867(-) m6A 5'UTR       24284625 chr10:119805947-119805948(-) m6A 5'UTR       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-3p	Nucleus PML tissue     32324824
	RAB11FIP2	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-3p
Interactor2: RAB11FIP2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg