Detail Information

Basic Information:


  VIRBase ID:  

VHID00671995

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-3p:           CLINT1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-3p CLINT1
miRBase
Accession/Entrez ID		 MIMAT0009148 9685
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - CLINT//ENTH//EPN4//EPNR

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CLINT1
chr5:157276024(-) A-I      intronic
chr5:157276025(-) A-I      intronic
chr5:157276057(-) A-I      intronic
chr5:157228759(-) A-I      intronic
chr5:157268058(-) A-I      intronic
chr5:157268450(-) A-I      intronic
chr5:157268465(-) A-I      intronic
chr5:157268474(-) A-I      intronic
chr5:157268740(-) A-I      intronic
chr5:157268818(-) A-I      intronic
chr5:157272191(-) A-I      intronic
chr5:157272193(-) A-I      intronic
chr5:157272245(-) A-I      intronic
chr5:157274291(-) A-I      intronic
chr5:157274395(-) A-I      intronic
chr5:157274410(-) A-I      intronic
chr5:157274411(-) A-I      intronic
chr5:157274419(-) A-I      intronic
chr5:157274462(-) A-I      intronic
chr5:157229122(-) A-I      intronic
chr5:157229121(-) A-I      intronic
chr5:157229107(-) A-I      intronic
chr5:157229106(-) A-I      intronic
chr5:157229096(-) A-I      intronic
chr5:157274472(-) A-I      intronic
chr5:157274517(-) A-I      intronic
chr5:157275738(-) A-I      intronic
chr5:157218347(-) A-I      intronic
chr5:157219351(-) A-I      intronic
chr5:157270431(-) A-I      intronic
chr5:157270437(-) A-I      intronic
chr5:157224500(-) A-I      intronic
chr5:157224508(-) A-I      intronic
chr5:157224590(-) A-I      intronic
chr5:157224631(-) A-I      intronic
chr5:157228693(-) A-I      intronic
chr5:157228742(-) A-I      intronic
chr5:157229081(-) A-I      intronic
chr5:157229116(-) A-I      intronic
chr5:157229182(-) A-I      intronic
chr5:157255905(-) A-I      intronic
chr5:157255978(-) A-I      intronic
chr5:157258815(-) A-I      intronic
chr5:157260768(-) A-I      intronic
chr5:157277899(-) A-I      intronic
chr5:157258791(-) A-I      intronic
chr5:157255985(-) A-I      intronic
chr5:157255988(-) A-I      intronic
chr5:157256840(-) A-I      intronic
chr5:157284203(-) A-I      intronic
chr5:157257062(-) A-I      intronic
chr5:157257228(-) A-I      intronic
chr5:157278492(-) A-I      intronic
chr5:157278476(-) A-I      intronic
chr5:157278471(-) A-I      intronic
chr5:157275755(-) A-I      intronic
chr5:157278451(-) A-I      intronic
chr5:157278081(-) A-I      intronic
chr5:157278078(-) A-I      intronic
chr5:157277905(-) A-I      intronic
chr5:157258778(-) A-I      intronic
chr5:157258770(-) A-I      intronic
chr5:157275766(-) A-I      intronic
chr5:157275907(-) A-I      intronic
chr5:157275934(-) A-I      intronic
chr5:157229736(-) A-I      intronic
chr5:157260781(-) A-I      intronic
chr5:157260801(-) A-I      intronic
chr5:157260817(-) A-I      intronic
chr5:157219388(-) A-I      intronic
chr5:157219447(-) A-I      intronic
chr5:157229085(-) A-I      intronic
chr5:157260837(-) A-I      intronic
chr5:157275943(-) A-I      intronic
chr5:157267886(-) A-I      intronic
chr5:157277424(-) A-I      intronic
chr5:157257627(-) A-I      intronic
chr5:157257970(-) A-I      intronic
chr5:157259093(-) A-I      intronic
chr5:157259264(-) A-I      intronic
chr5:157260893(-) A-I      intronic
chr5:157260900(-) A-I      intronic
chr5:157260906(-) A-I      intronic
chr5:157264218(-) A-I      intronic
chr5:157267801(-) A-I      intronic
chr5:157267810(-) A-I      intronic
chr5:157277900(-) A-I      intronic
chr5:157261180(-) A-I      intronic
chr5:157278452(-) A-I      intronic
chr5:157258864(-) A-I      intronic
chr5:157229067(-) A-I      intronic
chr5:157258976(-) A-I      intronic
chr5:157257699(-) A-I      intronic
chr5:157218246(-) A-I      intronic
chr5:157277495(-) A-I      intronic
chr5:157277941(-) A-I      intronic
chr5:157258846(-) A-I      intronic
chr5:157274261(-) A-I      intronic
chr5:157215719(-) A-I      intronic
chr5:157261099(-) A-I      intronic
chr5:157276048(-) A-I      intronic
chr5:157258838(-) A-I      intronic
chr5:157275027(-) A-I      intronic
chr5:157277967(-) A-I      intronic
chr5:157264175(-) A-I      intronic
chr5:157281949(-) A-I      intronic
chr5:157259107(-) A-I      intronic
chr5:157228584(-) A-I      intronic
chr5:157258977(-) A-I      intronic
chr5:157264293(-) A-I      intronic
chr5:157256670(-) A-I      intronic
chr5:157218333(-) A-I      intronic
chr5:157218205(-) A-I      intronic
chr5:157264309(-) A-I      intronic
chr5:157257969(-) A-I      intronic
chr5:157228758(-) A-I      intronic
chr5:157218100(-) A-I      intronic
chr5:157228675(-) A-I      intronic
chr5:157258903(-) A-I      intronic
chr5:157267794(-) A-I      intronic
chr5:157264332(-) A-I      intronic
chr5:157259056(-) A-I      intronic
chr5:157228258(-) A-I      intronic
chr5:157218245(-) A-I      intronic
chr5:157275269(-) A-I      intronic
chr5:157255912(-) A-I      intronic
chr5:157264288(-) A-I      intronic
chr5:157277601(-) A-I      intronic
chr5:157256672(-) A-I      intronic
chr5:157268753(-) A-I      intronic
chr5:157265268(-) A-I      intronic
chr5:157259194(-) A-I      intronic
chr5:157268560(-) A-I      intronic
chr5:157229019(-) A-I      intronic
chr5:157259266(-) A-I      intronic
chr5:157229080(-) A-I      intronic
chr5:157228312(-) A-I      intronic
chr5:157264816(-) A-I      intronic
chr5:157268838(-) A-I      intronic
chr5:157258046(-) A-I      intronic
chr5:157228729(-) A-I      intronic
chr5:157228755(-) A-I      intronic
chr5:157278042(-) A-I      intronic
chr5:157259271(-) A-I      intronic
chr5:157219493(-) A-I      intronic
chr5:157228298(-) A-I      intronic
chr5:157268769(-) A-I      intronic
chr5:157257924(-) A-I      intronic
chr5:157267887(-) A-I      intronic
chr5:157257990(-) A-I      intronic
chr5:157219434(-) A-I      intronic
chr5:157259186(-) A-I      intronic
chr5:157228507(-) A-I      intronic
chr5:157275882(-) A-I      intronic
chr5:157228637(-) A-I      intronic
chr5:157272343(-) A-I      intronic
chr5:157257164(-) A-I      intronic
chr5:157259134(-) A-I      intronic
chr5:157268911(-) A-I      intronic
chr5:157229747(-) A-I      intronic
chr5:157229082(-) A-I      intronic
chr5:157268767(-) A-I      intronic
chr5:157224673(-) A-I      intronic
chr5:157268835(-) A-I      intronic
chr5:157257888(-) A-I      intronic
chr5:157258799(-) A-I      intronic
chr5:157215731(-) A-I      intronic
chr5:157276046(-) A-I      intronic
chr5:157259187(-) A-I      intronic
chr5:157257245(-) A-I      intronic
chr5:157218068(-) A-I      intronic
chr5:157278601(-) A-I      intronic
chr5:157224532(-) A-I      intronic
chr5:157275196(-) A-I      intronic
chr5:157259263(-) A-I      intronic
chr5:157277497(-) A-I      intronic
chr5:157276055(-) A-I      intronic
chr5:157267888(-) A-I      intronic
chr5:157228432(-) A-I      intronic
chr5:157247345(-) A-I      intronic
chr5:157224410(-) A-I      intronic
chr5:157228349(-) A-I      intronic
chr5:157218247(-) A-I      intronic
chr5:157260936(-) A-I      intronic
chr5:157274949(-) A-I      intronic
chr5:157228606(-) A-I      intronic
chr5:157257914(-) A-I      intronic
chr5:157224542(-) A-I      intronic
chr5:157257085(-) A-I      intronic
chr5:157276001(-) A-I      intronic
chr5:157276002(-) A-I      intronic
chr5:157268491(-) A-I      intronic
chr5:157228692(-) A-I      intronic
chr5:157264350(-) A-I      intronic
chr5:157218271(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CLINT1
chr5:157284172(-) A-I intron -    21960545
chr5:157284173(-) A-I intron -    21960545
chr5:157217096(-) A-G intron -    22484847
chr5:157217203(-) A-G intron -    22484847
chr5:157217206(-) A-G intron -    22484847
chr5:157222846(-) A-G intron -    22484847
chr5:157222853(-) A-G intron -    22484847
chr5:157228432(-) A-G intron -    22484847
chr5:157228606(-) A-G intron -    22484847
chr5:157229019(-) A-G intron -    22484847
chr5:157229082(-) A-G intron -    22484847
chr5:157255912(-) A-G intron -    22484847
chr5:157257119(-) A-G intron -    22484847
chr5:157257164(-) A-G intron -    22484847
chr5:157257966(-) A-G intron -    22484847
chr5:157257969(-) A-G intron -    22484847
chr5:157257976(-) A-G intron -    22484847
chr5:157257990(-) A-G intron -    22484847
chr5:157258408(-) A-G intron -    22484847
chr5:157259024(-) G-A intron -    22484847
chr5:157259186(-) A-G intron -    22484847
chr5:157259187(-) A-G intron -    22484847
chr5:157259194(-) A-G intron -    22484847
chr5:157259263(-) A-G intron -    22484847
chr5:157259266(-) A-G intron -    22484847
chr5:157259271(-) A-G intron -    22484847
chr5:157261180(-) A-G intron -    22484847
chr5:157264207(-) A-G intron -    22484847
chr5:157264288(-) A-G intron -    22484847
chr5:157264293(-) A-G intron -    22484847
chr5:157264656(-) T-A intron -    22484847
chr5:157264657(-) G-A intron -    22484847
chr5:157265268(-) A-G intron -    22484847
chr5:157267794(-) A-G intron -    22484847
chr5:157267887(-) A-G intron -    22484847
chr5:157267888(-) A-G intron -    22484847
chr5:157268391(-) A-G intron -    22484847
chr5:157268753(-) A-G intron -    22484847
chr5:157268767(-) A-G intron -    22484847
chr5:157268769(-) A-G intron -    22484847
chr5:157268834(-) A-G intron -    22484847
chr5:157268835(-) A-G intron -    22484847
chr5:157268837(-) A-G intron -    22484847
chr5:157268838(-) A-G intron -    22484847
chr5:157268911(-) A-G intron -    22484847
chr5:157272343(-) A-G intron -    22484847
chr5:157272692(-) A-G intron -    22484847
chr5:157274261(-) A-G intron -    22484847
chr5:157274315(-) A-G intron -    22484847
chr5:157275196(-) A-G intron -    22484847
chr5:157275882(-) A-G intron -    22484847
chr5:157276001(-) A-G intron -    22484847
chr5:157276002(-) A-G intron -    22484847
chr5:157276046(-) A-G intron -    22484847
chr5:157276055(-) A-G intron -    22484847
chr5:157277495(-) A-G intron -    22484847
chr5:157277601(-) A-G intron -    22484847
chr5:157277900(-) A-G intron -    22484847
chr5:157278042(-) A-G intron -    22484847
chr5:157278079(-) A-G intron -    22484847
chr5:157278505(-) A-G intron -    22484847
chr5:157278599(-) G-A intron -    22484847
chr5:157278600(-) A-G intron -    22484847
chr5:157278601(-) A-G intron -    22484847
chr5:157278602(-) T-G intron -    22484847
chr5:157280109(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CLINT1
chr5:157214346-157214347(-) m6A 3'UTR//exon       26404942
chr5:157214403-157214404(-) m6A 3'UTR//exon       26404942
chr5:157214422-157214423(-) m6A 3'UTR//exon       26404942
chr5:157214527-157214528(-) m6A 3'UTR//exon       24981863//27773535
chr5:157214706-157214707(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:157214786-157214787(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:157214792-157214793(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:157214813-157214814(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:157214890-157214891(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:157214910-157214911(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr5:157214933-157214934(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:157214951-157214952(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr5:157216410-157216411(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535
chr5:157216441-157216442(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535
chr5:157216453-157216454(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535
chr5:157216487-157216488(-) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535
chr5:157216613-157216614(-) m6A exon//intron       27773535
chr5:157232928-157232929(-) m6A CDS//exon       24981863//26404942//27773535//27371828//22608085
chr5:157232965-157232966(-) m6A CDS//exon       24981863//26404942//27773535//27371828//22608085
chr5:157232993-157232994(-) m6A CDS//exon       24981863//26404942//27773535//27371828//22608085
chr5:157233007-157233008(-) m6A CDS//exon       24981863//26404942//27773535//27371828//22608085
chr5:157233049-157233050(-) m6A CDS       24981863//27773535//27371828//22608085
chr5:157236653-157236654(-) m6A CDS       24981863//27773535//27371828//22608085
chr5:157236758-157236759(-) m6A CDS       24981863//27773535
chr5:157240093-157240094(-) m6A CDS       24981863//27773535
chr5:157240117-157240118(-) m6A CDS       24981863//27773535//22575960
chr5:157240123-157240124(-) m6A CDS       24981863//27773535//22575960
chr5:157241235-157241236(-) m6A CDS       27773535//22575960
chr5:157244482-157244483(-) m6A CDS       27773535
chr5:157285943-157285944(-) m6A CDS//intron       24981863//27773535//27371828
chr5:157285970-157285971(-) m6A 5'UTR//CDS//intron       24981863//27773535//27371828//27773536
chr5:157285997-157285998(-) m6A 5'UTR//intron       25456834//24981863//27371828//27773536//22575960
chr5:157286055-157286056(-) m6A 5'UTR       25456834//24981863//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-3p
Nucleus PML tissue     32324824
CLINT1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-3p
Interactor2: CLINT1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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