Detail Information

Basic Information:


  VIRBase ID:  

VHID00671945

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-3p:           STK17B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-3p STK17B
miRBase
Accession/Entrez ID		 MIMAT0009148 9262
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - DRAK2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR STK17B
chr2:197017773(-) A-I      intronic
chr2:197006911(-) A-I      intronic
chr2:197012678(-) A-I      intronic
chr2:197012672(-) A-I      intronic
chr2:197011181(-) A-I      intronic
chr2:197023546(-) A-I      intronic
chr2:197021767(-) A-I      intronic
chr2:197021706(-) A-I      intronic
chr2:197006167(-) A-I      intronic
chr2:197028655(-) A-I      intronic
chr2:197028527(-) A-I      intronic
chr2:197027514(-) A-I      intronic
chr2:197011084(-) A-I      intronic
chr2:197006894(-) A-I      intronic
chr2:197007013(-) A-I      intronic
chr2:197006952(-) A-I      intronic
chr2:197027505(-) A-I      intronic
chr2:197027492(-) A-I      intronic
chr2:197011111(-) A-I      intronic
chr2:197026445(-) A-I      intronic
chr2:197026443(-) A-I      intronic
chr2:197011171(-) A-I      intronic
chr2:197006880(-) A-I      intronic
chr2:197027482(-) A-I      intronic
chr2:197012552(-) A-I      intronic
chr2:197012561(-) A-I      intronic
chr2:197026415(-) A-I      intronic
chr2:197011165(-) A-I      intronic
chr2:197024149(-) A-I      intronic
chr2:197012548(-) A-I      intronic
chr2:197023658(-) A-I      intronic
chr2:197026424(-) A-I      intronic
chr2:197026418(-) A-I      intronic
chr2:197012623(-) A-I      intronic
chr2:197012636(-) A-I      intronic
chr2:197023587(-) A-I      intronic
chr2:197006220(-) A-I      intronic
chr2:197016832(-) A-I      intronic
chr2:197016833(-) A-I      intronic
chr2:197016999(-) A-I      intronic
chr2:197021751(-) A-I      intronic
chr2:197012657(-) A-I      intronic
chr2:197017759(-) A-I      intronic
chr2:197017781(-) A-I      intronic
chr2:197017798(-) A-I      intronic
chr2:197018779(-) A-I      intronic
chr2:197018796(-) A-I      intronic
chr2:197017752(-) A-I      intronic
chr2:197016916(-) A-I      intronic
chr2:197011100(-) A-I      intronic
chr2:197012600(-) A-I      intronic
chr2:197018906(-) A-I      intronic
chr2:197014026(-) A-I      intronic
chr2:197007055(-) A-I      intronic
chr2:197017002(-) A-I      intronic
chr2:197024282(-) A-I      intronic
chr2:197011051(-) A-I      intronic
chr2:197024235(-) A-I      intronic
chr2:197017680(-) A-I      intronic
chr2:197017000(-) A-I      intronic
chr2:197018846(-) A-I      intronic
chr2:197018911(-) A-I      intronic
chr2:197016955(-) A-I      intronic
chr2:197006373(-) A-I      intronic
chr2:197016891(-) A-I      intronic
chr2:197016959(-) A-I      intronic
chr2:197018875(-) A-I      intronic
chr2:197017060(-) A-I      intronic
chr2:197016969(-) A-I      intronic
chr2:197012604(-) A-I      intronic
chr2:197006367(-) A-I      intronic
chr2:197016995(-) A-I      intronic
chr2:197017082(-) A-I      intronic
chr2:197017077(-) A-I      intronic
chr2:197010952(-) A-I      intronic
chr2:197017795(-) A-I      intronic
chr2:197011088(-) A-I      intronic
chr2:197016977(-) A-I      intronic
chr2:197016885(-) A-I      intronic
chr2:197026381(-) A-I      intronic
chr2:197017005(-) A-I      intronic
chr2:197018736(-) A-I      intronic
chr2:197018718(-) A-I      intronic
chr2:197006921(-) A-I      intronic
chr2:197011020(-) A-I      intronic
chr2:197013945(-) A-I      intronic
chr2:197010986(-) A-I      intronic
chr2:197016942(-) A-I      intronic
chr2:197027551(-) A-I      intronic
chr2:197014057(-) A-I      intronic
chr2:197018830(-) A-I      intronic
chr2:197018748(-) A-I      intronic
chr2:197006149(-) A-I      intronic
chr2:197011038(-) A-I      intronic
chr2:197012681(-) A-I      intronic
chr2:197005303(-) A-I      intronic
chr2:197012584(-) A-I      intronic
chr2:197027439(-) A-I      intronic
chr2:197018834(-) A-I      intronic
chr2:197006271(-) A-I      intronic
chr2:197006195(-) A-I      intronic
chr2:197006211(-) A-I      intronic
chr2:197024199(-) A-I      intronic
chr2:197018732(-) A-I      intronic
chr2:197018814(-) A-I      intronic
chr2:197023652(-) A-I      intronic
chr2:197014056(-) A-I      intronic
chr2:197011145(-) A-I      intronic
chr2:197024163(-) A-I      intronic
chr2:197017003(-) A-I      intronic
chr2:197018705(-) A-I      intronic
chr2:197006874(-) A-I      intronic
chr2:197007061(-) A-I      intronic
chr2:197018766(-) A-I      intronic
chr2:197012620(-) A-I      intronic
chr2:197024132(-) A-I      intronic
chr2:197010996(-) A-I      intronic
chr2:197016106(-) A-I      intronic
chr2:197026367(-) A-I      intronic
chr2:197024195(-) A-I      intronic
chr2:197011194(-) A-I      intronic
chr2:197026441(-) A-I      intronic
chr2:197024145(-) A-I      intronic
chr2:197011152(-) A-I      intronic
chr2:197027506(-) A-I      intronic
chr2:197006352(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED STK17B
chr2:197017795(-) A-I intron -    15342557
chr2:197018402(-) A-I intron -    15342557
chr2:197018717(-) A-I intron -    15342557   //15258596
chr2:197018766(-) A-I intron -    15342557   //15258596
chr2:197018767(-) A-I intron -    15342557   //15258596
chr2:197018801(-) A-I intron -    15342557   //15258596
chr2:197018830(-) A-I intron -    15342557   //15258596
chr2:197018846(-) A-I intron -    15342557   //15258596
chr2:197018875(-) A-I intron -    15342557
chr2:197000389(-) G-C exon 3'UTR    22484847
chr2:197006121(-) A-G intron -    22484847
chr2:197006195(-) A-G intron -    22484847
chr2:197006211(-) A-G intron -    22484847
chr2:197006261(-) A-G intron -    22484847
chr2:197006271(-) A-G intron -    22484847
chr2:197006352(-) A-G intron -    22484847
chr2:197006367(-) A-G intron -    22484847
chr2:197006373(-) A-G intron -    22484847
chr2:197006375(-) A-G intron -    22484847
chr2:197006874(-) A-G intron -    22484847
chr2:197006875(-) A-G intron -    22484847
chr2:197006921(-) A-G intron -    22484847
chr2:197007061(-) A-G intron -    22484847
chr2:197011100(-) A-G intron -    22484847
chr2:197011145(-) A-G intron -    22484847
chr2:197011194(-) A-G intron -    22484847
chr2:197012725(-) A-G intron -    22484847
chr2:197014057(-) A-G intron -    22484847
chr2:197017795(-) A-G intron -    22484847
chr2:197018732(-) A-G intron -    22484847
chr2:197018793(-) A-G intron -    22484847
chr2:197018801(-) A-G intron -    22484847
chr2:197018814(-) A-G intron -    22484847
chr2:197018830(-) A-G intron -    22484847
chr2:197018836(-) A-G intron -    22484847
chr2:197018846(-) A-G intron -    22484847
chr2:197018858(-) A-G intron -    22484847
chr2:197023652(-) A-G intron -    22484847
chr2:197024132(-) A-G intron -    22484847
chr2:197024282(-) A-G intron -    22484847
chr2:197026441(-) A-G intron -    22484847
chr2:197027439(-) A-G intron -    22484847
chr2:197027502(-) A-G intron -    22484847
chr2:197027506(-) A-G intron -    22484847
chr2:197027551(-) A-G intron -    22484847
chr2:197027557(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase STK17B
chr2:196999511-196999512(-) m6A 3'UTR       26404942
chr2:196999647-196999648(-) m6A 3'UTR       26404942
chr2:197001026-197001027(-) m6A 3'UTR       26404942
chr2:197001039-197001040(-) m6A 3'UTR       26404942
chr2:197001889-197001890(-) m6A 3'UTR       27773535
chr2:197002145-197002146(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085
chr2:197002194-197002195(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr2:197002273-197002274(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr2:197002292-197002293(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr2:197002316-197002317(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr2:197002321-197002322(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr2:197002352-197002353(-) m6A CDS       24284625//24981863//28052920//26404942//27773535//27371828//22608085
chr2:197002370-197002371(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//22608085
chr2:197002390-197002391(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//22608085
chr2:197002399-197002400(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//22608085
chr2:197002446-197002447(-) m6A CDS       24981863//26404942//22608085
chr2:197004376-197004377(-) m6A CDS       24981863//27773535//22608085
chr2:197004407-197004408(-) m6A CDS       27773535
chr2:197004452-197004453(-) m6A CDS       27773535
chr2:197021353-197021354(-) m6A CDS       24981863//26404942//27773535
chr2:197028027-197028028(-) m6A CDS       26404942//27773535
chr2:197028124-197028125(-) m6A 5'UTR       27773535
chr2:197036074-197036075(-) m6A 5'UTR//intron       27371828
chr2:197036108-197036109(-) m6A 5'UTR//intron       27371828
chr2:197036142-197036143(-) m6A 5'UTR//intron       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-3p
Nucleus PML tissue     32324824
STK17B
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-3p
Interactor2: STK17B

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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