Basic Information:

  VIRBase ID:  

VHID00671841

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-3p:  MIMAT0009148          ZNF239:  NM_001324350     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-3p	ZNF239
miRBase Accession/Entrez ID	MIMAT0009148	8187
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HOK-2//MOK2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZNF239	chr10:44067145(-) A-I      intronic chr10:44067144(-) A-I      intronic chr10:44067139(-) A-I      intronic chr10:44067185(-) A-I      intronic chr10:44067194(-) A-I      intronic chr10:44067135(-) A-I      intronic chr10:44067284(-) A-I      intronic chr10:44054169(-) A-I      intronic chr10:44064403(-) A-I      intronic chr10:44064293(-) A-I      intronic chr10:44057242(-) A-I      intronic chr10:44054076(-) A-I      intronic chr10:44067118(-) A-I      intronic chr10:44064441(-) A-I      intronic chr10:44054037(-) A-I      intronic chr10:44064445(-) A-I      intronic chr10:44062459(-) A-I      intronic chr10:44067205(-) A-I      intronic chr10:44053993(-) A-I      intronic chr10:44054178(-) A-I      intronic chr10:44060076(-) A-I      intronic chr10:44054034(-) A-I      intronic chr10:44053975(-) A-I      intronic chr10:44064415(-) A-I      intronic chr10:44064280(-) A-I      intronic chr10:44061819(-) A-I      intronic chr10:44064241(-) A-I      intronic chr10:44067286(-) A-I      intronic chr10:44057175(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZNF239	chr10:44052104-44052105(-) m6A 3'UTR       24209618//24981863//22608085 chr10:44052276-44052277(-) m6A CDS       24284625//24209618//24981863 chr10:44052660-44052661(-) m6A CDS       - chr10:44052828-44052829(-) m6A CDS       24284625//24981863//27773535//22608085 chr10:44052844-44052845(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:44052883-44052884(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr10:44052912-44052913(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr10:44052996-44052997(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr10:44053060-44053061(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr10:44053149-44053150(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr10:44053155-44053156(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr10:44053170-44053171(-) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr10:44053183-44053184(-) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr10:44053300-44053301(-) m6A CDS//exon       24284625//24209618//24981863//22608085 chr10:44053309-44053310(-) m6A CDS//exon       24284625//24209618//24981863//22608085 chr10:44053343-44053344(-) m6A CDS//exon       24284625//24209618//24981863//22608085 chr10:44053357-44053358(-) m6A CDS//exon       24284625//24209618//24981863//22608085 chr10:44053393-44053394(-) m6A CDS//exon       24284625//24209618//24981863//22608085 chr10:44053399-44053400(-) m6A CDS//exon       24284625//24209618//24981863//22608085 chr10:44053455-44053456(-) m6A CDS//exon       24284625//24209618//24981863//22608085 chr10:44053577-44053578(-) m6A 5'UTR//exon       24284625//24209618//22608085 chr10:44053615-44053616(-) m6A 5'UTR//exon       22608085 chr10:44063356-44063357(-) m6A 5'UTR//intron       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-3p	Nucleus PML tissue     32324824
	ZNF239	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-3p
Interactor2: ZNF239

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg