Basic Information:

  VIRBase ID:  

VHID00671824

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-3p:  MIMAT0009148          ZFAND5:  NM_001102421     

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Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-3p	ZFAND5
miRBase Accession/Entrez ID	MIMAT0009148	7763
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ZA20D2//ZFAND5A//ZNF216

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZFAND5	chr9:74968543(-) A-I      3'UTR chr9:74967193(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ZFAND5	chr9:74971252(-) A-I intron -    19478186 chr9:74966576(-) A-I exon 3'UTR    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZFAND5	chr9:74969373-74969374(-) m6A 3'UTR//exon       27773535 chr9:74969818-74969819(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:74969883-74969884(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:74969948-74969949(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:74970094-74970095(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:74970133-74970134(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr9:74970239-74970240(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr9:74970255-74970256(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr9:74970263-74970264(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:74970281-74970282(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:74970342-74970343(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr9:74970359-74970360(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr9:74970427-74970428(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr9:74970455-74970456(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr9:74970576-74970577(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535 chr9:74970601-74970602(-) m6A 3'UTR//exon       24981863//26404942//27773535 chr9:74970618-74970619(-) m6A 3'UTR//exon       24981863//26404942//27773535 chr9:74970811-74970812(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr9:74970843-74970844(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr9:74970849-74970850(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr9:74974351-74974352(-) m6A CDS//exon       - chr9:74974371-74974372(-) m6A CDS//exon       - chr9:74975067-74975068(-) m6A CDS//exon       - chr9:74975079-74975080(-) m6A CDS//exon       - chr9:74975444-74975445(-) m6A exon//intron       24981863//27371828 chr9:74975486-74975487(-) m6A exon//intron       24981863//27371828 chr9:74975499-74975500(-) m6A exon//intron       24981863//27371828 chr9:74975507-74975508(-) m6A exon//intron       24981863 chr9:74975521-74975522(-) m6A exon//intron       24981863 chr9:74975672-74975673(-) m6A CDS//exon       - chr9:74975681-74975682(-) m6A CDS//exon       - chr9:74978404-74978405(-) m6A 5'UTR//exon//intron       - chr9:74978410-74978411(-) m6A 5'UTR//exon//intron       - chr9:74978417-74978418(-) m6A 5'UTR//exon//intron       - chr9:74978447-74978448(-) m6A 5'UTR//exon//intron       - chr9:74978468-74978469(-) m6A 5'UTR//exon//intron       - chr9:74979414-74979415(-) m6A 5'UTR//CDS//intron       27773536 chr9:74979542-74979543(-) m6A 5'UTR//intron       24209618//27773536 chr9:74979620-74979621(-) m6A 5'UTR//exon       24209618//27773536 chr9:74979640-74979641(-) m6A 5'UTR//exon       24209618//27773536 chr9:74979775-74979776(-) m6A 5'UTR//exon       24284625//27371828//27773536//22575960 chr9:74979785-74979786(-) m6A 5'UTR//exon       24284625//27371828//27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-3p	Nucleus PML tissue     32324824
	ZFAND5	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-3p
Interactor2: ZFAND5

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg