Basic Information:

  VIRBase ID:  

VHID00671694

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-3p:  MIMAT0009148          SLAMF1:  NR_104401     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-3p	SLAMF1
miRBase Accession/Entrez ID	MIMAT0009148	6504
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD150//CDw150//SLAM

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLAMF1	chr1:160587723(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLAMF1	chr1:160586913(-) G-A intron -    22484847 chr1:160586955(-) A-T intron -    22484847 chr1:160586956(-) A-T intron -    22484847 chr1:160586967(-) T-C intron -    22484847 chr1:160587723(-) A-G intron -    22484847 chr1:160605543(-) C-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLAMF1	chr1:160578928-160578929(-) m6A 3'UTR       26404942 chr1:160579628-160579629(-) m6A 3'UTR       26404942 chr1:160579650-160579651(-) m6A 3'UTR       26404942 chr1:160579662-160579663(-) m6A 3'UTR       - chr1:160579669-160579670(-) m6A 3'UTR       - chr1:160579676-160579677(-) m6A 3'UTR       - chr1:160579746-160579747(-) m6A 3'UTR       - chr1:160579859-160579860(-) m6A 3'UTR       - chr1:160579866-160579867(-) m6A 3'UTR       - chr1:160579873-160579874(-) m6A 3'UTR       - chr1:160579908-160579909(-) m6A 3'UTR       - chr1:160579932-160579933(-) m6A 3'UTR       - chr1:160579985-160579986(-) m6A 3'UTR       - chr1:160580071-160580072(-) m6A 3'UTR//CDS       28052920//26404942//27371828 chr1:160580152-160580153(-) m6A 3'UTR//intron       28052920//26404942//27371828 chr1:160580180-160580181(-) m6A 3'UTR//intron       28052920//26404942//27773535//27371828 chr1:160580193-160580194(-) m6A 3'UTR//intron       28052920//26404942//27773535//27371828 chr1:160580212-160580213(-) m6A 3'UTR//intron       28052920//26404942//27773535//27371828 chr1:160580239-160580240(-) m6A 3'UTR//intron       28052920//26404942//27773535//27371828 chr1:160580257-160580258(-) m6A 3'UTR//intron       28052920//26404942//27773535//27371828 chr1:160580312-160580313(-) m6A 3'UTR//intron       28052920//26404942//27371828 chr1:160580370-160580371(-) m6A 3'UTR//intron       28052920//26404942//27371828 chr1:160580443-160580444(-) m6A 3'UTR//intron       28052920//26404942//27371828 chr1:160580476-160580477(-) m6A 3'UTR//intron       28052920//26404942//27371828 chr1:160580483-160580484(-) m6A 3'UTR//intron       28052920//26404942//27371828 chr1:160580493-160580494(-) m6A 3'UTR//intron       28052920//26404942//27371828 chr1:160580516-160580517(-) m6A 3'UTR//intron       28052920//26404942//27371828 chr1:160580528-160580529(-) m6A 3'UTR//intron       28052920//26404942//27371828 chr1:160580584-160580585(-) m6A CDS//intron       28052920//26404942//27371828 chr1:160582332-160582333(-) m6A CDS//intron       - chr1:160582355-160582356(-) m6A CDS//intron       - chr1:160585535-160585536(-) m6A intron       - chr1:160585542-160585543(-) m6A intron       - chr1:160589571-160589572(-) m6A CDS//intron       - chr1:160604441-160604442(-) m6A CDS//intron       28052920 chr1:160604545-160604546(-) m6A CDS//intron       28052920//26404942 chr1:160604593-160604594(-) m6A CDS//intron       26404942 chr1:160604633-160604634(-) m6A CDS//intron       26404942 chr1:160607168-160607169(-) m6A CDS//exon       28052920//26404942//27371828 chr1:160607180-160607181(-) m6A CDS//exon       28052920//26404942//27371828 chr1:160607225-160607226(-) m6A CDS//exon       28052920//26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-3p	Nucleus PML tissue     32324824
	SLAMF1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-3p
Interactor2: SLAMF1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg