Basic Information:

  VIRBase ID:  

VHID00671671

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-3p:  MIMAT0009148          SCN4B:  NR_024527     

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Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-3p	SCN4B
miRBase Accession/Entrez ID	MIMAT0009148	6330
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ATFB17//LQT10//Navbeta4

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SCN4B	chr11:118004458-118004459(-) m6A 3'UTR//exon       25456834 chr11:118004504-118004505(-) m6A 3'UTR//exon       25456834 chr11:118004557-118004558(-) m6A 3'UTR//exon       25456834 chr11:118004584-118004585(-) m6A 3'UTR//exon       25456834 chr11:118004639-118004640(-) m6A 3'UTR//exon       24209618 chr11:118005421-118005422(-) m6A 3'UTR//exon       - chr11:118005532-118005533(-) m6A 3'UTR//exon       - chr11:118007155-118007156(-) m6A 3'UTR//exon       - chr11:118007177-118007178(-) m6A 3'UTR//exon       - chr11:118007229-118007230(-) m6A 3'UTR//exon       - chr11:118007270-118007271(-) m6A 3'UTR//exon       - chr11:118007551-118007552(-) m6A 3'UTR//exon       25456834//22608085 chr11:118007604-118007605(-) m6A 3'UTR//exon       25456834//22608085 chr11:118007629-118007630(-) m6A 3'UTR//exon       25456834//22608085 chr11:118007649-118007650(-) m6A 3'UTR//exon       25456834 chr11:118007664-118007665(-) m6A 3'UTR//exon       25456834 chr11:118007690-118007691(-) m6A 3'UTR//exon       - chr11:118007759-118007760(-) m6A CDS//exon       - chr11:118011934-118011935(-) m6A CDS//exon       - chr11:118023390-118023391(-) m6A 5'UTR       - chr11:118023395-118023396(-) m6A 5'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-3p	Nucleus PML tissue     32324824
	SCN4B	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-3p
Interactor2: SCN4B

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg