Basic Information:

  VIRBase ID:  

VHID00670880

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          SBK1:  NM_001024401     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	SBK1
miRBase Accession/Entrez ID	MIMAT0009147	388228
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SBK

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SBK1	chr16:28324235(+) A-I      intronic chr16:28320210(+) A-I      intronic chr16:28327187(+) A-I      intronic chr16:28319605(+) A-I      intronic chr16:28319611(+) A-I      intronic chr16:28327061(+) A-I      intronic chr16:28318914(+) A-I      intronic chr16:28311684(+) A-I      intronic chr16:28326988(+) A-I      intronic chr16:28317114(+) A-I      intronic chr16:28326848(+) A-I      intronic chr16:28326037(+) A-I      intronic chr16:28314948(+) A-I      intronic chr16:28327037(+) A-I      intronic chr16:28322854(+) A-I      intronic chr16:28321945(+) A-I      intronic chr16:28318827(+) A-I      intronic chr16:28319988(+) A-I      intronic chr16:28318940(+) A-I      intronic chr16:28317136(+) A-I      intronic chr16:28327322(+) A-I      intronic chr16:28319987(+) A-I      intronic chr16:28320122(+) A-I      intronic chr16:28324197(+) A-I      intronic chr16:28308532(+) A-I      intronic chr16:28307324(+) A-I      intronic chr16:28324057(+) A-I      intronic chr16:28322921(+) A-I      intronic chr16:28324509(+) A-I      intronic chr16:28327199(+) A-I      intronic chr16:28319970(+) A-I      intronic chr16:28311710(+) A-I      intronic chr16:28319535(+) A-I      intronic chr16:28324416(+) A-I      intronic chr16:28320218(+) A-I      intronic chr16:28308387(+) A-I      intronic chr16:28327216(+) A-I      intronic chr16:28324677(+) A-I      intronic chr16:28317083(+) A-I      intronic chr16:28322950(+) A-I      intronic chr16:28326275(+) A-I      intronic chr16:28328184(+) A-I      intronic chr16:28326826(+) A-I      intronic chr16:28314905(+) A-I      intronic chr16:28311831(+) A-I      intronic chr16:28328119(+) A-I      intronic chr16:28315113(+) A-I      intronic chr16:28326091(+) A-I      intronic chr16:28324829(+) A-I      intronic chr16:28321956(+) A-I      intronic chr16:28324837(+) A-I      intronic chr16:28324854(+) A-I      intronic chr16:28322833(+) A-I      intronic chr16:28328232(+) A-I      intronic chr16:28325713(+) A-I      intronic chr16:28319955(+) A-I      intronic chr16:28327831(+) A-I      intronic chr16:28318797(+) A-I      intronic chr16:28311780(+) A-I      intronic chr16:28327296(+) A-I      intronic chr16:28325509(+) A-I      intronic chr16:28316308(+) A-I      intronic chr16:28320990(+) A-I      intronic chr16:28324358(+) A-I      intronic chr16:28326045(+) A-I      intronic chr16:28326179(+) A-I      intronic chr16:28324808(+) A-I      intronic chr16:28311740(+) A-I      intronic chr16:28324138(+) A-I      intronic chr16:28324716(+) A-I      intronic chr16:28321978(+) A-I      intronic chr16:28327002(+) A-I      intronic chr16:28324278(+) A-I      intronic chr16:28316933(+) A-I      intronic chr16:28319950(+) A-I      intronic chr16:28318804(+) A-I      intronic chr16:28327226(+) A-I      intronic chr16:28321027(+) A-I      intronic chr16:28315059(+) A-I      intronic chr16:28325547(+) A-I      intronic chr16:28316917(+) A-I      intronic chr16:28322837(+) A-I      intronic chr16:28325717(+) A-I      intronic chr16:28316953(+) A-I      intronic chr16:28308455(+) A-I      intronic chr16:28324065(+) A-I      intronic chr16:28326900(+) A-I      intronic chr16:28324865(+) A-I      intronic chr16:28327830(+) A-I      intronic chr16:28328319(+) A-I      intronic chr16:28326975(+) A-I      intronic chr16:28319646(+) A-I      intronic chr16:28324812(+) A-I      intronic chr16:28325501(+) A-I      intronic chr16:28320989(+) A-I      intronic chr16:28320027(+) A-I      intronic chr16:28315060(+) A-I      intronic chr16:28326180(+) A-I      intronic chr16:28318841(+) A-I      intronic chr16:28316908(+) A-I      intronic chr16:28314935(+) A-I      intronic chr16:28307376(+) A-I      intronic chr16:28319883(+) A-I      intronic chr16:28316270(+) A-I      intronic chr16:28306050(+) A-I      intronic chr16:28314983(+) A-I      intronic chr16:28314965(+) A-I      intronic chr16:28324345(+) A-I      intronic chr16:28319971(+) A-I      intronic chr16:28321931(+) A-I      intronic chr16:28322958(+) A-I      intronic chr16:28322567(+) A-I      intronic chr16:28311774(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SBK1	chr16:28304036-28304037(+) m6A 5'UTR       27371828 chr16:28304167-28304168(+) m6A 5'UTR       24981863 chr16:28304187-28304188(+) m6A 5'UTR       24284625//24981863 chr16:28304215-28304216(+) m6A 5'UTR       24284625//24981863 chr16:28304249-28304250(+) m6A 5'UTR       24284625//24981863//22608085 chr16:28304286-28304287(+) m6A 5'UTR       24284625//24209618//24981863//22608085 chr16:28304328-28304329(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085 chr16:28304336-28304337(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085 chr16:28304421-28304422(+) m6A 5'UTR       24284625//25456834//24981863//22608085 chr16:28304431-28304432(+) m6A 5'UTR       24284625//25456834//24981863//22608085 chr16:28304481-28304482(+) m6A 5'UTR       25456834//24981863//22608085 chr16:28304568-28304569(+) m6A 5'UTR       25456834 chr16:28330446-28330447(+) m6A CDS       24284625//25456834//24981863//22608085 chr16:28330453-28330454(+) m6A CDS       24284625//25456834//24981863//22608085 chr16:28330492-28330493(+) m6A CDS       24284625//25456834//24981863//22608085 chr16:28331412-28331413(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr16:28331454-28331455(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr16:28331658-28331659(+) m6A CDS       24209618//25456834//24981863 chr16:28332173-28332174(+) m6A CDS       25456834 chr16:28332189-28332190(+) m6A CDS       25456834 chr16:28332262-28332263(+) m6A 3'UTR       25456834//24981863 chr16:28332356-28332357(+) m6A 3'UTR       25456834//24981863 chr16:28332420-28332421(+) m6A 3'UTR       25456834//24981863 chr16:28332476-28332477(+) m6A 3'UTR       25456834//24981863 chr16:28332615-28332616(+) m6A 3'UTR       25456834//24981863 chr16:28332621-28332622(+) m6A 3'UTR       25456834//24981863 chr16:28332736-28332737(+) m6A 3'UTR       25456834 chr16:28333921-28333922(+) m6A 3'UTR       - chr16:28333982-28333983(+) m6A 3'UTR       - chr16:28334033-28334034(+) m6A 3'UTR       - chr16:28334052-28334053(+) m6A 3'UTR       - chr16:28334392-28334393(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	SBK1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: SBK1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg