Detail Information

Basic Information:


  VIRBase ID:  

VHID00670430

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:           TMEM161B:      

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Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-5p TMEM161B
miRBase
Accession/Entrez ID		 MIMAT0009147 153396
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - FLB3342//PRO1313

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMEM161B
chr5:87525678(-) A-I      intronic
chr5:87525658(-) A-I      intronic
chr5:87517234(-) A-I      intronic
chr5:87507510(-) A-I      intronic
chr5:87517264(-) A-I      intronic
chr5:87517954(-) A-I      intronic
chr5:87525740(-) A-I      intronic
chr5:87530671(-) A-I      intronic
chr5:87517153(-) A-I      intronic
chr5:87517240(-) A-I      intronic
chr5:87518024(-) A-I      intronic
chr5:87528664(-) A-I      intronic
chr5:87522897(-) A-I      intronic
chr5:87517181(-) A-I      intronic
chr5:87525684(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMEM161B
chr5:87517240(-) A-G intron -    22484847
chr5:87517264(-) A-G intron -    22484847
chr5:87525684(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMEM161B
chr5:87485541-87485542(-) m6A 3'UTR       27773535
chr5:87491557-87491558(-) Y 3'UTR//intron       26075521
chr5:87491917-87491918(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr5:87491951-87491952(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr5:87492079-87492080(-) Y 3'UTR//CDS//intron       26075521
chr5:87492120-87492121(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr5:87564589-87564590(-) m6A 5'UTR//exon//intron       24981863
chr5:87564611-87564612(-) m6A 5'UTR//exon       24981863
chr5:87564650-87564651(-) m6A 5'UTR//exon       24981863
chr5:87564693-87564694(-) m6A exon       25456834//24981863
chr5:87565183-87565184(-) m6A exon       24284625//24981863//22608085
chr5:87565200-87565201(-) m6A exon       24284625//24981863//22608085
chr5:87565266-87565267(-) m6A exon       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-5p
Nucleus PML tissue     32324824
TMEM161B
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-5p
Interactor2: TMEM161B

Evidence Support:


Prediction-Evidence cRep//miRanda
Support Database RepTar//VmiReg

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