Basic Information:

  VIRBase ID:  

VHID00670327

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          STK35:  NM_080836     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	STK35
miRBase Accession/Entrez ID	MIMAT0009147	140901
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CLIK1//STK35L1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	STK35	chr20:2111776(+) A-I      intronic chr20:2111888(+) A-I      intronic chr20:2102898(+) A-I      intronic chr20:2099101(+) A-I      intronic chr20:2099043(+) A-I      intronic chr20:2099039(+) A-I      intronic chr20:2099038(+) A-I      intronic chr20:2099024(+) A-I      intronic chr20:2098311(+) A-I      intronic chr20:2098256(+) A-I      intronic chr20:2098236(+) A-I      intronic chr20:2098232(+) A-I      intronic chr20:2098185(+) A-I      intronic chr20:2092135(+) A-I      intronic chr20:2098191(+) A-I      intronic chr20:2112026(+) A-I      intronic chr20:2099156(+) A-I      intronic chr20:2098113(+) A-I      intronic chr20:2112011(+) A-I      intronic chr20:2112035(+) A-I      intronic chr20:2099085(+) A-I      intronic chr20:2098101(+) A-I      intronic chr20:2102962(+) A-I      intronic chr20:2098291(+) A-I      intronic chr20:2099063(+) A-I      intronic chr20:2099081(+) A-I      intronic chr20:2116356(+) A-I      intronic chr20:2098220(+) A-I      intronic chr20:2102867(+) A-I      intronic chr20:2102819(+) A-I      intronic chr20:2112004(+) A-I      intronic chr20:2098230(+) A-I      intronic chr20:2098105(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	STK35	chr20:2099498(+) A-I intron -    22327324 chr20:2099434(+) A-G intron -    22484847 chr20:2099476(+) A-G intron -    22484847 chr20:2099498(+) A-G intron -    22484847 chr20:2111793(+) A-G intron -    22484847 chr20:2111843(+) A-G intron -    22484847 chr20:2098103(+) A-G intron -    22484847 chr20:2098105(+) A-G intron -    22484847 chr20:2098113(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	STK35	chr20:2082356-2082357(+) m6A 5'UTR       - chr20:2082487-2082488(+) m6A 5'UTR       24981863 chr20:2083998-2083999(+) m6A CDS       24284625 chr20:2097383-2097384(+) m6A CDS       24284625 chr20:2097416-2097417(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr20:2097479-2097480(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:2097497-2097498(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:2097509-2097510(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr20:2097567-2097568(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:2097620-2097621(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:2097674-2097675(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:2097705-2097706(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:2097725-2097726(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:2097790-2097791(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:2097811-2097812(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:2097822-2097823(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:2097829-2097830(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:2097866-2097867(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:2097904-2097905(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:2097965-2097966(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:2097984-2097985(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:2097991-2097992(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr20:2098001-2098002(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:2098056-2098057(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:2124443-2124444(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:2124640-2124641(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr20:2124649-2124650(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr20:2124665-2124666(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr20:2124679-2124680(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr20:2124908-2124909(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:2124952-2124953(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:2124960-2124961(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:2125020-2125021(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:2125058-2125059(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:2125124-2125125(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:2125172-2125173(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:2125252-2125253(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr20:2125265-2125266(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr20:2125278-2125279(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr20:2125453-2125454(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr20:2125566-2125567(+) m6A 3'UTR//intron       24284625 chr20:2126366-2126367(+) m6A 3'UTR//intron       - chr20:2126468-2126469(+) m6A 3'UTR//intron       24981863 chr20:2126479-2126480(+) m6A 3'UTR//intron       24981863 chr20:2127991-2127992(+) m6A 3'UTR//intron       24981863 chr20:2128204-2128205(+) m6A 3'UTR//intron       - chr20:2128892-2128893(+) m6A 3'UTR//intron       27773535 chr20:2129004-2129005(+) m6A 3'UTR//intron       27773535 chr20:2129016-2129017(+) m6A 3'UTR//intron       27773535 chr20:2129089-2129090(+) m6A 3'UTR//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	STK35	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: STK35

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg