Basic Information:

  VIRBase ID:  

VHID00670313

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          ASB6:  NM_001202403     

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Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	ASB6
miRBase Accession/Entrez ID	MIMAT0009147	140459
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ASB6	chr9:132397070-132397071(-) m6A 3'UTR       - chr9:132397090-132397091(-) m6A 3'UTR       - chr9:132397132-132397133(-) m6A 3'UTR       - chr9:132397173-132397174(-) m6A 3'UTR       - chr9:132397277-132397278(-) m6A 3'UTR       - chr9:132397306-132397307(-) m6A 3'UTR       - chr9:132397328-132397329(-) m6A 3'UTR       - chr9:132397515-132397516(-) m6A 3'UTR       - chr9:132397639-132397640(-) m6A 3'UTR       - chr9:132397720-132397721(-) m6A 3'UTR       - chr9:132397777-132397778(-) m6A 3'UTR       - chr9:132397829-132397830(-) m6A 3'UTR       - chr9:132397863-132397864(-) m6A 3'UTR       - chr9:132399189-132399190(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr9:132399245-132399246(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085 chr9:132399371-132399372(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132399431-132399432(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132399464-132399465(-) m6A 3'UTR       24284625//25456834//24981863//22608085 chr9:132399569-132399570(-) m6A 3'UTR       24284625//24981863 chr9:132399744-132399745(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132399817-132399818(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132399871-132399872(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132400002-132400003(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132400041-132400042(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr9:132400300-132400301(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr9:132400317-132400318(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr9:132400352-132400353(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr9:132400372-132400373(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr9:132400521-132400522(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132400651-132400652(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132400664-132400665(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132400702-132400703(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132400874-132400875(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr9:132400932-132400933(-) m6A CDS//intron       24284625//27773535//27371828//22575960 chr9:132401515-132401516(-) m6A CDS//intron       24284625//27371828 chr9:132401566-132401567(-) m6A CDS//intron       24284625//27371828 chr9:132401684-132401685(-) m6A CDS       24284625 chr9:132401732-132401733(-) m6A CDS       24284625 chr9:132401741-132401742(-) m6A CDS       24284625 chr9:132404385-132404386(-) m6A 5'UTR       27371828//27773536 chr9:132404408-132404409(-) m6A 5'UTR       27371828//27773536 chr9:132404420-132404421(-) m6A 5'UTR       27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	ASB6	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: ASB6

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg