Detail Information

Basic Information:


  VIRBase ID:  

VHID00670093

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:           EFHC1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-5p EFHC1
miRBase
Accession/Entrez ID		 MIMAT0009147 114327
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - dJ304B14.2//EJM1//POC9//RIB72

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR EFHC1
chr6:52323652(+) A-I      intronic
chr6:52326281(+) A-I      intronic
chr6:52323634(+) A-I      intronic
chr6:52323644(+) A-I      intronic
chr6:52314104(+) A-I      intronic
chr6:52332080(+) A-I      intronic
chr6:52346479(+) A-I      intronic
chr6:52346491(+) A-I      intronic
chr6:52346991(+) A-I      intronic
chr6:52346465(+) A-I      intronic
chr6:52346457(+) A-I      intronic
chr6:52346483(+) A-I      intronic
chr6:52346994(+) A-I      intronic
chr6:52347021(+) A-I      intronic
chr6:52324703(+) A-I      intronic
chr6:52314100(+) A-I      intronic
chr6:52327618(+) A-I      intronic
chr6:52327955(+) A-I      intronic
chr6:52330468(+) A-I      intronic
chr6:52346443(+) A-I      intronic
chr6:52324657(+) A-I      intronic
chr6:52320286(+) A-I      intronic
chr6:52346454(+) A-I      intronic
chr6:52330485(+) A-I      intronic
chr6:52330490(+) A-I      intronic
chr6:52358339(+) A-I      3'UTR
chr6:52357667(+) A-I      3'UTR
chr6:52357574(+) A-I      3'UTR
chr6:52358384(+) A-I      3'UTR
chr6:52360491(+) A-I      3'UTR
chr6:52358370(+) A-I      3'UTR
chr6:52324748(+) A-I      intronic
chr6:52346516(+) A-I      intronic
chr6:52346585(+) A-I      intronic
chr6:52346978(+) A-I      intronic
chr6:52321658(+) A-I      intronic
chr6:52346570(+) A-I      intronic
chr6:52332134(+) A-I      intronic
chr6:52346885(+) A-I      intronic
chr6:52328094(+) A-I      intronic
chr6:52327498(+) A-I      intronic
chr6:52346459(+) A-I      intronic
chr6:52327510(+) A-I      intronic
chr6:52327525(+) A-I      intronic
chr6:52338486(+) A-I      intronic
chr6:52330391(+) A-I      intronic
chr6:52360520(+) A-I      3'UTR
chr6:52357554(+) A-I      3'UTR
chr6:52358441(+) A-I      3'UTR
chr6:52358353(+) A-I      3'UTR
chr6:52358307(+) A-I      3'UTR
chr6:52357561(+) A-I      3'UTR
chr6:52357498(+) A-I      3'UTR
chr6:52358299(+) A-I      3'UTR
chr6:52357444(+) A-I      3'UTR
chr6:52360456(+) A-I      3'UTR
chr6:52360466(+) A-I      3'UTR
chr6:52360405(+) A-I      3'UTR
chr6:52358335(+) A-I      3'UTR
chr6:52357530(+) A-I      3'UTR
chr6:52358352(+) A-I      3'UTR
chr6:52360473(+) A-I      3'UTR
chr6:52357568(+) A-I      3'UTR
chr6:52357430(+) A-I      3'UTR
chr6:52358365(+) A-I      3'UTR
chr6:52358362(+) A-I      3'UTR
chr6:52358303(+) A-I      3'UTR
chr6:52357492(+) A-I      3'UTR
chr6:52358300(+) A-I      3'UTR
chr6:52358391(+) A-I      3'UTR
chr6:52357539(+) A-I      3'UTR
chr6:52358371(+) A-I      3'UTR
chr6:52358400(+) A-I      3'UTR
chr6:52357542(+) A-I      3'UTR
chr6:52357432(+) A-I      3'UTR
chr6:52357565(+) A-I      3'UTR
chr6:52357587(+) A-I      3'UTR
chr6:52358346(+) A-I      3'UTR
chr6:52321547(+) A-I      intronic
chr6:52332247(+) A-I      intronic
chr6:52346403(+) A-I      intronic
chr6:52346583(+) A-I      intronic
chr6:52328021(+) A-I      intronic
chr6:52327565(+) A-I      intronic
chr6:52328043(+) A-I      intronic
chr6:52346977(+) A-I      intronic
chr6:52328018(+) A-I      intronic
chr6:52346342(+) A-I      intronic
chr6:52319769(+) A-I      intronic
chr6:52346490(+) A-I      intronic
chr6:52346507(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED EFHC1
chr6:52358299(+) A-I exon 3'UTR    15342557
chr6:52358300(+) A-I exon 3'UTR    15342557
chr6:52358303(+) A-I exon 3'UTR    15342557   //15258596
chr6:52358307(+) A-I exon 3'UTR    15342557
chr6:52358329(+) A-I exon 3'UTR    15342557   //15258596
chr6:52358335(+) A-I exon 3'UTR    15342557   //15258596
chr6:52358346(+) A-I exon 3'UTR    15342557
chr6:52358353(+) A-I exon 3'UTR    15342557
chr6:52358354(+) A-I exon 3'UTR    15342557
chr6:52358361(+) A-I exon 3'UTR    15342557
chr6:52358362(+) A-I exon 3'UTR    15342557
chr6:52358365(+) A-I exon 3'UTR    15342557   //15258596
chr6:52358391(+) A-I exon 3'UTR    15342557
chr6:52358399(+) A-I exon 3'UTR    15342557
chr6:52358400(+) A-I exon 3'UTR    15342557   //15258596
chr6:52358441(+) A-I exon 3'UTR    15342557   //15258596
chr6:52358442(+) A-I exon 3'UTR    15342557   //15258596
chr6:52360405(+) A-I exon 3'UTR    15342557   //15258596
chr6:52360419(+) A-I exon 3'UTR    15342557   //15258596
chr6:52360438(+) A-I exon 3'UTR    15342557   //21960545
chr6:52360456(+) A-I exon 3'UTR    15342557   //21960545
chr6:52360461(+) A-I exon 3'UTR    15342557
chr6:52360490(+) A-I exon 3'UTR    15342557
chr6:52360520(+) A-I exon 3'UTR    15342557
chr6:52357542(+) A-I intron -    21960545
chr6:52323870(+) A-I intron -    21960545
chr6:52323566(+) A-G intron -    22484847
chr6:52323630(+) A-G intron -    22484847
chr6:52323781(+) A-G intron -    22484847
chr6:52332247(+) A-G intron -    22484847
chr6:52357430(+) A-G intron -    22484847
chr6:52357498(+) A-G intron -    22484847
chr6:52357542(+) A-G intron -    22484847
chr6:52358307(+) A-G intron -    22484847
chr6:52358352(+) A-G intron -    22484847
chr6:52360438(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase EFHC1
chr6:52285137-52285138(+) m6A 5'UTR       24981863
chr6:52285178-52285179(+) m6A 5'UTR//exon       24981863
chr6:52317868-52317869(+) m6A 3'UTR//intron       24981863//22608085
chr6:52317878-52317879(+) m6A 3'UTR//intron       24981863//22608085
chr6:52317975-52317976(+) m6A 3'UTR//intron       24981863//22608085
chr6:52317988-52317989(+) m6A 3'UTR//intron       24981863//22608085
chr6:52318959-52318960(+) Y 3'UTR//CDS       26075521
chr6:52319046-52319047(+) m6A 3'UTR//CDS       -
chr6:52329695-52329696(+) m6A 3'UTR//CDS       -
chr6:52354944-52354945(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr6:52354987-52354988(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr6:52355026-52355027(+) m6A 3'UTR//CDS//exon       24981863//22608085
chr6:52355080-52355081(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr6:52355086-52355087(+) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr6:52357134-52357135(+) m6A 3'UTR//CDS//exon       22608085
chr6:52357161-52357162(+) m6A 3'UTR//exon       22608085
chr6:52357179-52357180(+) m6A 3'UTR//exon       22608085
chr6:52357842-52357843(+) m6A 3'UTR       22608085
chr6:52357916-52357917(+) m6A 3'UTR       25456834//22608085
chr6:52357940-52357941(+) m6A 3'UTR       25456834//22608085
chr6:52357952-52357953(+) m6A 3'UTR       25456834//22608085
chr6:52357988-52357989(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr6:52357993-52357994(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr6:52357999-52358000(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr6:52358037-52358038(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr6:52358101-52358102(+) m6A 3'UTR       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-5p
Nucleus PML tissue     32324824
EFHC1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-5p
Interactor2: EFHC1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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