Detail Information

Basic Information:


  VIRBase ID:  

VHID00670092

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:           SLC2A13:      

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Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-5p SLC2A13
miRBase
Accession/Entrez ID		 MIMAT0009147 114134
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - HMIT

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC2A13
chr12:40206366(-) A-I      intronic
chr12:40244866(-) A-I      intronic
chr12:40244871(-) A-I      intronic
chr12:40244872(-) A-I      intronic
chr12:40494521(-) A-I      intronic
chr12:40402291(-) A-I      intronic
chr12:40402318(-) A-I      intronic
chr12:40312933(-) A-I      intronic
chr12:40402220(-) A-I      intronic
chr12:40365655(-) A-I      intronic
chr12:40312911(-) A-I      intronic
chr12:40356143(-) A-I      intronic
chr12:40434443(-) A-I      intronic
chr12:40312809(-) A-I      intronic
chr12:40355999(-) A-I      intronic
chr12:40312921(-) A-I      intronic
chr12:40356096(-) A-I      intronic
chr12:40389652(-) A-I      intronic
chr12:40362246(-) A-I      intronic
chr12:40355575(-) A-I      intronic
chr12:40440974(-) A-I      intronic
chr12:40318624(-) A-I      intronic
chr12:40467927(-) A-I      intronic
chr12:40494622(-) A-I      intronic
chr12:40356097(-) A-I      intronic
chr12:40397695(-) A-I      intronic
chr12:40432417(-) A-I      intronic
chr12:40467884(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC2A13
chr12:40312933(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC2A13
chr12:40148873-40148874(-) m6A 3'UTR       27773535
chr12:40153643-40153644(-) m6A 3'UTR       27773535
chr12:40153776-40153777(-) m6A 3'UTR       27773535//22608085
chr12:40153795-40153796(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr12:40153985-40153986(-) m6A CDS       24981863//27773535//22608085
chr12:40154016-40154017(-) m6A CDS       24981863//27773535//22608085
chr12:40422217-40422218(-) m6A CDS       22608085
chr12:40499064-40499065(-) m6A CDS       27773536
chr12:40499093-40499094(-) m6A CDS       27773536
chr12:40499381-40499382(-) m6A CDS       24209618//27773536
chr12:40499422-40499423(-) m6A CDS       24209618//27773536
chr12:40499661-40499662(-) m6A 5'UTR       27371828//27773536
chr12:40499830-40499831(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-5p
Nucleus PML tissue     32324824
SLC2A13
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-5p
Interactor2: SLC2A13

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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