Detail Information

Basic Information:


  VIRBase ID:  

VHID00669928

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:           SERAC1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-5p SERAC1
miRBase
Accession/Entrez ID		 MIMAT0009147 84947
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SERAC1
chr6:158568335(-) A-I      intronic
chr6:158568344(-) A-I      intronic
chr6:158568347(-) A-I      intronic
chr6:158568349(-) A-I      intronic
chr6:158560061(-) A-I      intronic
chr6:158560042(-) A-I      intronic
chr6:158560055(-) A-I      intronic
chr6:158560064(-) A-I      intronic
chr6:158554566(-) A-I      intronic
chr6:158578232(-) A-I      intronic
chr6:158572381(-) A-I      intronic
chr6:158572526(-) A-I      intronic
chr6:158572550(-) A-I      intronic
chr6:158578248(-) A-I      intronic
chr6:158578256(-) A-I      intronic
chr6:158578260(-) A-I      intronic
chr6:158560072(-) A-I      intronic
chr6:158580344(-) A-I      intronic
chr6:158554529(-) A-I      intronic
chr6:158554582(-) A-I      intronic
chr6:158580448(-) A-I      intronic
chr6:158554558(-) A-I      intronic
chr6:158554690(-) A-I      intronic
chr6:158554521(-) A-I      intronic
chr6:158554494(-) A-I      intronic
chr6:158550814(-) A-I      intronic
chr6:158556401(-) A-I      intronic
chr6:158566057(-) A-I      intronic
chr6:158566750(-) A-I      intronic
chr6:158568295(-) A-I      intronic
chr6:158569603(-) A-I      intronic
chr6:158569612(-) A-I      intronic
chr6:158569731(-) A-I      intronic
chr6:158557665(-) A-I      intronic
chr6:158568346(-) A-I      intronic
chr6:158580468(-) A-I      intronic
chr6:158554199(-) A-I      intronic
chr6:158573154(-) A-I      intronic
chr6:158568354(-) A-I      intronic
chr6:158539550(-) A-I      intronic
chr6:158566620(-) A-I      intronic
chr6:158531302(-) A-I      3'UTR
chr6:158557114(-) A-I      intronic
chr6:158566642(-) A-I      intronic
chr6:158563614(-) A-I      intronic
chr6:158566707(-) A-I      intronic
chr6:158554654(-) A-I      intronic
chr6:158568262(-) A-I      intronic
chr6:158573198(-) A-I      intronic
chr6:158573233(-) A-I      intronic
chr6:158572489(-) A-I      intronic
chr6:158572987(-) A-I      intronic
chr6:158554183(-) A-I      intronic
chr6:158577134(-) A-I      intronic
chr6:158554635(-) A-I      intronic
chr6:158560060(-) A-I      intronic
chr6:158580859(-) A-I      intronic
chr6:158580824(-) A-I      intronic
chr6:158580748(-) A-I      intronic
chr6:158566689(-) A-I      intronic
chr6:158560103(-) A-I      intronic
chr6:158572447(-) A-I      intronic
chr6:158580717(-) A-I      intronic
chr6:158572452(-) A-I      intronic
chr6:158573008(-) A-I      intronic
chr6:158580874(-) A-I      intronic
chr6:158580370(-) A-I      intronic
chr6:158580836(-) A-I      intronic
chr6:158566216(-) A-I      intronic
chr6:158580821(-) A-I      intronic
chr6:158560056(-) A-I      intronic
chr6:158573245(-) A-I      intronic
chr6:158580795(-) A-I      intronic
chr6:158567646(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SERAC1
chr6:158543650(-) A-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SERAC1
chr6:158530564-158530565(-) m6A 3'UTR       27773535
chr6:158530604-158530605(-) m6A 3'UTR       27773535
chr6:158530635-158530636(-) m6A 3'UTR       27773535
chr6:158531854-158531855(-) m6A 3'UTR       22608085
chr6:158531961-158531962(-) m6A 3'UTR       24981863//27773535//22608085
chr6:158531970-158531971(-) m6A 3'UTR       24981863//27773535//22608085
chr6:158531976-158531977(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085
chr6:158532256-158532257(-) m6A 3'UTR       24209618//24981863//27773535//27371828//22608085
chr6:158532264-158532265(-) m6A 3'UTR       24209618//24981863//27773535//27371828//22608085
chr6:158532307-158532308(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr6:158532352-158532353(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr6:158532401-158532402(-) m6A 3'UTR//CDS       24209618//24981863//27773535//22608085
chr6:158532410-158532411(-) m6A 3'UTR//CDS       24209618//24981863//27773535//22608085
chr6:158532488-158532489(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr6:158534540-158534541(-) m6A 3'UTR//CDS       22608085
chr6:158534566-158534567(-) m6A 3'UTR//CDS       22608085
chr6:158534572-158534573(-) m6A 3'UTR//CDS       22608085
chr6:158540085-158540086(-) m6A 3'UTR//CDS       27773535
chr6:158540102-158540103(-) m6A 3'UTR//CDS       27773535
chr6:158540127-158540128(-) m6A 3'UTR//CDS       27773535
chr6:158540143-158540144(-) m6A 3'UTR//CDS       27773535
chr6:158541460-158541461(-) m6A 3'UTR//CDS       27773535
chr6:158541514-158541515(-) m6A 3'UTR//CDS       27773535
chr6:158541522-158541523(-) m6A 3'UTR//CDS       27773535
chr6:158579349-158579350(-) m6A CDS       27371828//27773536
chr6:158579453-158579454(-) m6A 5'UTR//intron       27371828//27773536
chr6:158580196-158580197(-) m6A 5'UTR//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-5p
Nucleus PML tissue     32324824
SERAC1
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-5p
Interactor2: SERAC1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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