Detail Information

Basic Information:


  VIRBase ID:  

VHID00669763

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:           CLPB:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-5p CLPB
miRBase
Accession/Entrez ID		 MIMAT0009147 81570
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - ANKCLB//HSP78//MEGCANN//MGCA7//SKD3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CLPB
chr11:72042326(-) A-I      intronic
chr11:72042821(-) A-I      intronic
chr11:72074105(-) A-I      intronic
chr11:72075303(-) A-I      intronic
chr11:72034487(-) A-I      intronic
chr11:72082181(-) A-I      intronic
chr11:72087919(-) A-I      intronic
chr11:72034444(-) A-I      intronic
chr11:72074162(-) A-I      intronic
chr11:72042891(-) A-I      intronic
chr11:72078304(-) A-I      intronic
chr11:72042280(-) A-I      intronic
chr11:72124211(-) A-I      intronic
chr11:72096789(-) A-I      intronic
chr11:72099586(-) A-I      intronic
chr11:72121238(-) A-I      intronic
chr11:72034499(-) A-I      intronic
chr11:72075363(-) A-I      intronic
chr11:72076251(-) A-I      intronic
chr11:72027107(-) A-I      intronic
chr11:72087912(-) A-I      intronic
chr11:72133306(-) A-I      intronic
chr11:72075389(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CLPB
chr11:72003503-72003504(-) m6A 3'UTR       25456834//22608085
chr11:72003616-72003617(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085
chr11:72003629-72003630(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085
chr11:72003689-72003690(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085
chr11:72003753-72003754(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085
chr11:72003776-72003777(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr11:72003855-72003856(-) m6A 3'UTR       24284625//27773535
chr11:72004005-72004006(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:72004010-72004011(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:72004015-72004016(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:72004021-72004022(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:72004041-72004042(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:72004085-72004086(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:72004248-72004249(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr11:72004267-72004268(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr11:72004456-72004457(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:72004461-72004462(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:72004469-72004470(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:72004477-72004478(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr11:72004539-72004540(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr11:72004564-72004565(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:72004570-72004571(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:72004612-72004613(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:72004639-72004640(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:72005071-72005072(-) m6A 3'UTR//CDS       24284625//25456834//27773535//27371828//27773536//22575960//22608085
chr11:72005135-72005136(-) m6A 3'UTR//CDS       24284625//27773535
chr11:72005384-72005385(-) m6A 3'UTR//CDS       27773535
chr11:72005389-72005390(-) m6A 3'UTR//CDS       27773535
chr11:72005697-72005698(-) m6A 3'UTR//CDS//exon//intron       27773535
chr11:72006664-72006665(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr11:72012895-72012896(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr11:72013374-72013375(-) Y CDS       26075521
chr11:72013375-72013376(-) m6A CDS//exon       24981863
chr11:72018274-72018275(-) m6A CDS//exon       24981863
chr11:72018292-72018293(-) m6A CDS//exon       24981863
chr11:72019610-72019611(-) m6A CDS//exon       24981863//27371828
chr11:72040764-72040765(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22575960
chr11:72040816-72040817(-) m6A CDS//exon       24284625//24981863//27773535//22575960
chr11:72140147-72140148(-) m6A exon//intron       24284625//27773536
chr11:72145182-72145183(-) m6A 5'UTR//CDS//exon//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr11:72145213-72145214(-) m6A 5'UTR//CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr11:72145218-72145219(-) m6A 5'UTR//CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr11:72145229-72145230(-) m6A 5'UTR//CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr11:72145346-72145347(-) m6A 5'UTR//CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr11:72145398-72145399(-) Gm 5'UTR//CDS//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-5p
Nucleus PML tissue     32324824
CLPB
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-5p
Interactor2: CLPB

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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