Basic Information:

  VIRBase ID:  

VHID00669752

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          CLPTM1L:  NM_030782     

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Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	CLPTM1L
miRBase Accession/Entrez ID	MIMAT0009147	81037
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CRR9

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CLPTM1L	chr5:1342860(-) A-I      intronic chr5:1342840(-) A-I      intronic chr5:1342757(-) A-I      intronic chr5:1342923(-) A-I      intronic chr5:1342979(-) A-I      intronic chr5:1343051(-) A-I      intronic chr5:1343198(-) A-I      intronic chr5:1342976(-) A-I      intronic chr5:1343134(-) A-I      intronic chr5:1342800(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CLPTM1L	chr5:1342892(-) A-G intron -    22484847 chr5:1342955(-) A-G intron -    22484847 chr5:1343134(-) A-G intron -    22484847 chr5:1343198(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLPTM1L	chr5:1318080-1318081(-) m6A 3'UTR//exon       24284625 chr5:1318106-1318107(-) m6A 3'UTR//exon       24284625 chr5:1318290-1318291(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr5:1318356-1318357(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:1318367-1318368(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:1318402-1318403(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:1318487-1318488(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr5:1320339-1320340(-) m6A exon//intron       24284625//24981863//27773535//27371828//22575960 chr5:1326190-1326191(-) m6A exon//intron       27773535 chr5:1330626-1330627(-) m6A exon//intron       24284625 chr5:1330680-1330681(-) m6A exon//intron       24284625 chr5:1330735-1330736(-) m6A exon//intron       24284625 chr5:1331773-1331774(-) m6A exon//intron       27371828 chr5:1331816-1331817(-) m6A exon//intron       27371828 chr5:1331952-1331953(-) Am CDS//exon       - chr5:1339031-1339032(-) m6A CDS       24284625//22575960 chr5:1341784-1341785(-) Gm intron       - chr5:1344522-1344523(-) m6A 5'UTR//CDS       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	CLPTM1L	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: CLPTM1L

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg