Basic Information:

  VIRBase ID:  

VHID00669447

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          PPCDC:  NM_001301105     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	PPCDC
miRBase Accession/Entrez ID	MIMAT0009147	60490
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	coaC//MDS018//PPC-DC

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PPCDC	chr15:75325165(+) A-I      intronic chr15:75328053(+) A-I      intronic chr15:75328193(+) A-I      intronic chr15:75329200(+) A-I      intronic chr15:75329824(+) A-I      intronic chr15:75329928(+) A-I      intronic chr15:75329929(+) A-I      intronic chr15:75330047(+) A-I      intronic chr15:75333730(+) A-I      intronic chr15:75333737(+) A-I      intronic chr15:75329941(+) A-I      intronic chr15:75316958(+) A-I      intronic chr15:75333892(+) A-I      intronic chr15:75333820(+) A-I      intronic chr15:75332448(+) A-I      intronic chr15:75332553(+) A-I      intronic chr15:75329251(+) A-I      intronic chr15:75332503(+) A-I      intronic chr15:75325235(+) A-I      intronic chr15:75328150(+) A-I      intronic chr15:75316918(+) A-I      intronic chr15:75316969(+) A-I      intronic chr15:75328046(+) A-I      intronic chr15:75324033(+) A-I      intronic chr15:75332359(+) A-I      intronic chr15:75329833(+) A-I      intronic chr15:75330057(+) A-I      intronic chr15:75325344(+) A-I      intronic chr15:75329247(+) A-I      intronic chr15:75333825(+) A-I      intronic chr15:75338445(+) A-I      intronic chr15:75328262(+) A-I      intronic chr15:75334815(+) A-I      intronic chr15:75330009(+) A-I      intronic chr15:75328161(+) A-I      intronic chr15:75329286(+) A-I      intronic chr15:75332498(+) A-I      intronic chr15:75334654(+) A-I      intronic chr15:75325245(+) A-I      intronic chr15:75338387(+) A-I      intronic chr15:75338144(+) A-I      intronic chr15:75340407(+) A-I      intronic chr15:75334834(+) A-I      intronic chr15:75328146(+) A-I      intronic chr15:75329274(+) A-I      intronic chr15:75338294(+) A-I      intronic chr15:75338526(+) A-I      intronic chr15:75328188(+) A-I      intronic chr15:75329968(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PPCDC	chr15:75325235(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PPCDC	chr15:75341516-75341517(+) m6A CDS       24209618//25456834//24981863 chr15:75341526-75341527(+) m6A CDS       24209618//25456834//24981863 chr15:75341686-75341687(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr15:75341730-75341731(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr15:75341860-75341861(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr15:75341877-75341878(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr15:75341914-75341915(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr15:75342013-75342014(+) m6A 3'UTR       25456834//24981863//22608085 chr15:75342032-75342033(+) m6A 3'UTR//exon       25456834//24981863//22608085 chr15:75342087-75342088(+) m6A 3'UTR//intron       25456834//24981863//22608085 chr15:75406921-75406922(+) m6A intron       - chr15:75406977-75406978(+) m6A intron       - chr15:75407030-75407031(+) m6A intron       - chr15:75407048-75407049(+) m6A intron       - chr15:75407081-75407082(+) m6A intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	PPCDC	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: PPCDC

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg