Basic Information:

  VIRBase ID:  

VHID00669269

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          AGPAT3:  NM_020132     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	AGPAT3
miRBase Accession/Entrez ID	MIMAT0009147	56894
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	1-AGPAT 3//LPAAT-GAMMA1//LPAAT3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	AGPAT3	chr21:45308078(+) A-I      intronic chr21:45308086(+) A-I      intronic chr21:45398959(+) A-I      intronic chr21:45398969(+) A-I      intronic chr21:45398980(+) A-I      intronic chr21:45398983(+) A-I      intronic chr21:45399003(+) A-I      intronic chr21:45399090(+) A-I      intronic chr21:45399092(+) A-I      intronic chr21:45399109(+) A-I      intronic chr21:45399122(+) A-I      intronic chr21:45399125(+) A-I      intronic chr21:45343527(+) A-I      intronic chr21:45399848(+) A-I      intronic chr21:45399828(+) A-I      intronic chr21:45399832(+) A-I      intronic chr21:45399836(+) A-I      intronic chr21:45399841(+) A-I      intronic chr21:45399847(+) A-I      intronic chr21:45403211(+) A-I      3'UTR chr21:45403210(+) A-I      3'UTR chr21:45403173(+) A-I      3'UTR chr21:45380802(+) A-I      intronic chr21:45380821(+) A-I      intronic chr21:45383468(+) A-I      intronic chr21:45299035(+) A-I      intronic chr21:45299045(+) A-I      intronic chr21:45299053(+) A-I      intronic chr21:45299055(+) A-I      intronic chr21:45308070(+) A-I      intronic chr21:45403230(+) A-I      3'UTR chr21:45340833(+) A-I      intronic chr21:45340782(+) A-I      intronic chr21:45340751(+) A-I      intronic chr21:45340729(+) A-I      intronic chr21:45327580(+) A-I      intronic chr21:45327451(+) A-I      intronic chr21:45327432(+) A-I      intronic chr21:45327421(+) A-I      intronic chr21:45327420(+) A-I      intronic chr21:45327411(+) A-I      intronic chr21:45327379(+) A-I      intronic chr21:45327349(+) A-I      intronic chr21:45327344(+) A-I      intronic chr21:45327337(+) A-I      intronic chr21:45325200(+) A-I      intronic chr21:45325188(+) A-I      intronic chr21:45325172(+) A-I      intronic chr21:45322660(+) A-I      intronic chr21:45322618(+) A-I      intronic chr21:45315147(+) A-I      intronic chr21:45312921(+) A-I      intronic chr21:45312200(+) A-I      intronic chr21:45312094(+) A-I      intronic chr21:45312068(+) A-I      intronic chr21:45312035(+) A-I      intronic chr21:45312029(+) A-I      intronic chr21:45312026(+) A-I      intronic chr21:45311468(+) A-I      intronic chr21:45311408(+) A-I      intronic chr21:45311394(+) A-I      intronic chr21:45311393(+) A-I      intronic chr21:45311383(+) A-I      intronic chr21:45311331(+) A-I      intronic chr21:45311327(+) A-I      intronic chr21:45311259(+) A-I      intronic chr21:45310884(+) A-I      intronic chr21:45310799(+) A-I      intronic chr21:45310423(+) A-I      intronic chr21:45310411(+) A-I      intronic chr21:45308727(+) A-I      intronic chr21:45308693(+) A-I      intronic chr21:45308686(+) A-I      intronic chr21:45308684(+) A-I      intronic chr21:45308638(+) A-I      intronic chr21:45308173(+) A-I      intronic chr21:45308057(+) A-I      intronic chr21:45308050(+) A-I      intronic chr21:45307985(+) A-I      intronic chr21:45307961(+) A-I      intronic chr21:45307824(+) A-I      intronic chr21:45307810(+) A-I      intronic chr21:45307808(+) A-I      intronic chr21:45307786(+) A-I      intronic chr21:45307769(+) A-I      intronic chr21:45307735(+) A-I      intronic chr21:45307675(+) A-I      intronic chr21:45307591(+) A-I      intronic chr21:45305530(+) A-I      intronic chr21:45305395(+) A-I      intronic chr21:45305370(+) A-I      intronic chr21:45305369(+) A-I      intronic chr21:45299208(+) A-I      intronic chr21:45299141(+) A-I      intronic chr21:45299124(+) A-I      intronic chr21:45299066(+) A-I      intronic chr21:45299052(+) A-I      intronic chr21:45299011(+) A-I      intronic chr21:45299002(+) A-I      intronic chr21:45298822(+) A-I      intronic chr21:45298635(+) A-I      intronic chr21:45295043(+) A-I      intronic chr21:45295001(+) A-I      intronic chr21:45294966(+) A-I      intronic chr21:45294965(+) A-I      intronic chr21:45293521(+) A-I      intronic chr21:45293520(+) A-I      intronic chr21:45293506(+) A-I      intronic chr21:45293493(+) A-I      intronic chr21:45293388(+) A-I      intronic chr21:45293385(+) A-I      intronic chr21:45293359(+) A-I      intronic chr21:45290453(+) A-I      intronic chr21:45290412(+) A-I      intronic chr21:45290406(+) A-I      intronic chr21:45290337(+) A-I      intronic chr21:45308720(+) A-I      intronic chr21:45399106(+) A-I      intronic chr21:45399102(+) A-I      intronic chr21:45399087(+) A-I      intronic chr21:45399060(+) A-I      intronic chr21:45398924(+) A-I      intronic chr21:45398915(+) A-I      intronic chr21:45398428(+) A-I      intronic chr21:45398399(+) A-I      intronic chr21:45397716(+) A-I      intronic chr21:45397713(+) A-I      intronic chr21:45397700(+) A-I      intronic chr21:45396051(+) A-I      intronic chr21:45396012(+) A-I      intronic chr21:45385755(+) A-I      intronic chr21:45384950(+) A-I      intronic chr21:45384351(+) A-I      intronic chr21:45384277(+) A-I      intronic chr21:45384065(+) A-I      intronic chr21:45384064(+) A-I      intronic chr21:45384016(+) A-I      intronic chr21:45383579(+) A-I      intronic chr21:45383554(+) A-I      intronic chr21:45383549(+) A-I      intronic chr21:45383474(+) A-I      intronic chr21:45383433(+) A-I      intronic chr21:45383426(+) A-I      intronic chr21:45383381(+) A-I      intronic chr21:45382145(+) A-I      intronic chr21:45382021(+) A-I      intronic chr21:45381946(+) A-I      intronic chr21:45380910(+) A-I      intronic chr21:45380906(+) A-I      intronic chr21:45380748(+) A-I      intronic chr21:45375446(+) A-I      intronic chr21:45367799(+) A-I      intronic chr21:45367784(+) A-I      intronic chr21:45367758(+) A-I      intronic chr21:45367690(+) A-I      intronic chr21:45367682(+) A-I      intronic chr21:45367661(+) A-I      intronic chr21:45340982(+) A-I      intronic chr21:45340914(+) A-I      intronic chr21:45340887(+) A-I      intronic chr21:45298722(+) A-I      intronic chr21:45385756(+) A-I      intronic chr21:45384913(+) A-I      intronic chr21:45392229(+) A-I      intronic chr21:45398407(+) A-I      intronic chr21:45382068(+) A-I      intronic chr21:45397683(+) A-I      intronic chr21:45392165(+) A-I      intronic chr21:45382065(+) A-I      intronic chr21:45366209(+) A-I      intronic chr21:45308184(+) A-I      intronic chr21:45310435(+) A-I      intronic chr21:45385570(+) A-I      intronic chr21:45380900(+) A-I      intronic chr21:45308763(+) A-I      intronic chr21:45398381(+) A-I      intronic chr21:45398215(+) A-I      intronic chr21:45380793(+) A-I      intronic chr21:45380890(+) A-I      intronic chr21:45310819(+) A-I      intronic chr21:45385729(+) A-I      intronic chr21:45384829(+) A-I      intronic chr21:45308616(+) A-I      intronic chr21:45340743(+) A-I      intronic chr21:45384119(+) A-I      intronic chr21:45385549(+) A-I      intronic chr21:45380767(+) A-I      intronic chr21:45383352(+) A-I      intronic chr21:45311257(+) A-I      intronic chr21:45383510(+) A-I      intronic chr21:45307636(+) A-I      intronic chr21:45384994(+) A-I      intronic chr21:45399002(+) A-I      intronic chr21:45380942(+) A-I      intronic chr21:45375532(+) A-I      intronic chr21:45299070(+) A-I      intronic chr21:45346715(+) A-I      intronic chr21:45308719(+) A-I      intronic chr21:45375410(+) A-I      intronic chr21:45290515(+) A-I      intronic chr21:45333324(+) A-I      intronic chr21:45375531(+) A-I      intronic chr21:45292131(+) A-I      intronic chr21:45385674(+) A-I      intronic chr21:45399021(+) A-I      intronic chr21:45298639(+) A-I      intronic chr21:45305318(+) A-I      intronic chr21:45299016(+) A-I      intronic chr21:45384010(+) A-I      intronic chr21:45308123(+) A-I      intronic chr21:45385716(+) A-I      intronic chr21:45305415(+) A-I      intronic chr21:45396048(+) A-I      intronic chr21:45380861(+) A-I      intronic chr21:45396220(+) A-I      intronic chr21:45311268(+) A-I      intronic chr21:45346844(+) A-I      intronic chr21:45346835(+) A-I      intronic chr21:45383405(+) A-I      intronic chr21:45366347(+) A-I      intronic chr21:45366243(+) A-I      intronic chr21:45375409(+) A-I      intronic chr21:45307555(+) A-I      intronic chr21:45396131(+) A-I      intronic chr21:45385694(+) A-I      intronic chr21:45310881(+) A-I      intronic chr21:45385715(+) A-I      intronic chr21:45305485(+) A-I      intronic chr21:45385544(+) A-I      intronic chr21:45305436(+) A-I      intronic chr21:45383994(+) A-I      intronic chr21:45340840(+) A-I      intronic chr21:45343967(+) A-I      intronic chr21:45384298(+) A-I      intronic chr21:45398223(+) A-I      intronic chr21:45310312(+) A-I      intronic chr21:45290338(+) A-I      intronic chr21:45380874(+) A-I      intronic chr21:45346888(+) A-I      intronic chr21:45294897(+) A-I      intronic chr21:45311435(+) A-I      intronic chr21:45294906(+) A-I      intronic chr21:45310503(+) A-I      intronic chr21:45384080(+) A-I      intronic chr21:45396089(+) A-I      intronic chr21:45385667(+) A-I      intronic chr21:45367709(+) A-I      intronic chr21:45322800(+) A-I      intronic chr21:45398227(+) A-I      intronic chr21:45329276(+) A-I      intronic chr21:45308130(+) A-I      intronic chr21:45307665(+) A-I      intronic chr21:45383469(+) A-I      intronic chr21:45326982(+) A-I      intronic chr21:45308670(+) A-I      intronic chr21:45384945(+) A-I      intronic chr21:45305435(+) A-I      intronic chr21:45385039(+) A-I      intronic chr21:45385592(+) A-I      intronic chr21:45399083(+) A-I      intronic chr21:45299049(+) A-I      intronic chr21:45392125(+) A-I      intronic chr21:45340976(+) A-I      intronic chr21:45399061(+) A-I      intronic chr21:45295051(+) A-I      intronic chr21:45380781(+) A-I      intronic chr21:45308082(+) A-I      intronic chr21:45333346(+) A-I      intronic chr21:45340847(+) A-I      intronic chr21:45385621(+) A-I      intronic chr21:45384251(+) A-I      intronic chr21:45312030(+) A-I      intronic chr21:45346941(+) A-I      intronic chr21:45308023(+) A-I      intronic chr21:45385677(+) A-I      intronic chr21:45308791(+) A-I      intronic chr21:45398993(+) A-I      intronic chr21:45385617(+) A-I      intronic chr21:45383420(+) A-I      intronic chr21:45299142(+) A-I      intronic chr21:45299143(+) A-I      intronic chr21:45396052(+) A-I      intronic chr21:45382090(+) A-I      intronic chr21:45298788(+) A-I      intronic chr21:45298762(+) A-I      intronic chr21:45385704(+) A-I      intronic chr21:45385518(+) A-I      intronic chr21:45299151(+) A-I      intronic chr21:45392207(+) A-I      intronic chr21:45385516(+) A-I      intronic chr21:45385512(+) A-I      intronic chr21:45307744(+) A-I      intronic chr21:45290383(+) A-I      intronic chr21:45295065(+) A-I      intronic chr21:45398464(+) A-I      intronic chr21:45384977(+) A-I      intronic chr21:45307605(+) A-I      intronic chr21:45397548(+) A-I      intronic chr21:45308759(+) A-I      intronic chr21:45298751(+) A-I      intronic chr21:45366302(+) A-I      intronic chr21:45398425(+) A-I      intronic chr21:45299021(+) A-I      intronic chr21:45375622(+) A-I      intronic chr21:45299156(+) A-I      intronic chr21:45397512(+) A-I      intronic chr21:45398323(+) A-I      intronic chr21:45312028(+) A-I      intronic chr21:45384257(+) A-I      intronic chr21:45298721(+) A-I      intronic chr21:45396074(+) A-I      intronic chr21:45392130(+) A-I      intronic chr21:45381901(+) A-I      intronic chr21:45325254(+) A-I      intronic chr21:45384260(+) A-I      intronic chr21:45397495(+) A-I      intronic chr21:45398377(+) A-I      intronic chr21:45383444(+) A-I      intronic chr21:45375731(+) A-I      intronic chr21:45367706(+) A-I      intronic chr21:45299152(+) A-I      intronic chr21:45333221(+) A-I      intronic chr21:45327071(+) A-I      intronic chr21:45310688(+) A-I      intronic chr21:45310562(+) A-I      intronic chr21:45298739(+) A-I      intronic chr21:45340841(+) A-I      intronic chr21:45385618(+) A-I      intronic chr21:45308608(+) A-I      intronic chr21:45380981(+) A-I      intronic chr21:45375437(+) A-I      intronic chr21:45310344(+) A-I      intronic chr21:45383336(+) A-I      intronic chr21:45307629(+) A-I      intronic chr21:45312081(+) A-I      intronic chr21:45325129(+) A-I      intronic chr21:45325271(+) A-I      intronic chr21:45384032(+) A-I      intronic chr21:45383404(+) A-I      intronic chr21:45308811(+) A-I      intronic chr21:45346722(+) A-I      intronic chr21:45382130(+) A-I      intronic chr21:45290452(+) A-I      intronic chr21:45295028(+) A-I      intronic chr21:45396170(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	AGPAT3	chr21:45298721(+) A-I intron -    15342557 chr21:45298788(+) A-I intron -    15342557 chr21:45298824(+) A-I intron -    15342557 chr21:45298889(+) A-I intron -    15342557 chr21:45299016(+) A-I intron -    15342557 chr21:45299070(+) A-I intron -    15342557 chr21:45341254(+) A-I intron -    22327324 chr21:45385592(+) A-I intron -    22327324 chr21:45385631(+) A-I intron -    22327324 chr21:45385729(+) A-I intron -    22327324 chr21:45341175(+) A-G intron -    22484847 chr21:45341196(+) A-G intron -    22484847 chr21:45341236(+) A-G intron -    22484847 chr21:45341254(+) A-G intron -    22484847 chr21:45343513(+) A-G intron -    22484847 chr21:45343614(+) A-G intron -    22484847 chr21:45299142(+) A-G intron -    22484847 chr21:45299143(+) A-G intron -    22484847 chr21:45308719(+) A-G intron -    22484847 chr21:45308759(+) A-G intron -    22484847 chr21:45310330(+) A-G intron -    22484847 chr21:45312023(+) A-G intron -    22484847 chr21:45312028(+) A-G intron -    22484847 chr21:45367772(+) A-G intron -    22484847 chr21:45375622(+) A-G intron -    22484847 chr21:45380890(+) A-G intron -    22484847 chr21:45380900(+) A-G intron -    22484847 chr21:45380901(+) A-G intron -    22484847 chr21:45382068(+) A-G intron -    22484847 chr21:45382090(+) A-G intron -    22484847 chr21:45383404(+) A-G intron -    22484847 chr21:45383405(+) A-G intron -    22484847 chr21:45383534(+) A-G intron -    22484847 chr21:45384090(+) A-G intron -    22484847 chr21:45384260(+) A-G intron -    22484847 chr21:45384940(+) A-G intron -    22484847 chr21:45384945(+) A-G intron -    22484847 chr21:45384994(+) A-G intron -    22484847 chr21:45385039(+) A-G intron -    22484847 chr21:45385516(+) A-G intron -    22484847 chr21:45385549(+) A-G intron -    22484847 chr21:45385571(+) A-G intron -    22484847 chr21:45385591(+) A-G intron -    22484847 chr21:45385592(+) A-G intron -    22484847 chr21:45385609(+) A-G intron -    22484847 chr21:45385617(+) A-G intron -    22484847 chr21:45385618(+) A-G intron -    22484847 chr21:45385621(+) A-G intron -    22484847 chr21:45385631(+) A-G intron -    22484847 chr21:45385673(+) A-G intron -    22484847 chr21:45385674(+) A-G intron -    22484847 chr21:45385692(+) C-A intron -    22484847 chr21:45385715(+) A-G intron -    22484847 chr21:45385728(+) A-G intron -    22484847 chr21:45385729(+) A-G intron -    22484847 chr21:45385756(+) A-G intron -    22484847 chr21:45397647(+) A-G intron -    22484847 chr21:45397680(+) A-G intron -    22484847 chr21:45397683(+) A-G intron -    22484847 chr21:45398223(+) A-G intron -    22484847 chr21:45398377(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	AGPAT3	chr21:45374663-45374664(+) m6A 5'UTR//exon//intron       - chr21:45374684-45374685(+) m6A 5'UTR//exon//intron       - chr21:45374743-45374744(+) m6A 5'UTR//exon//intron       - chr21:45374791-45374792(+) m6A 5'UTR//exon//intron       - chr21:45374820-45374821(+) m6A 5'UTR//exon//intron       - chr21:45374827-45374828(+) m6A 5'UTR//exon//intron       - chr21:45379586-45379587(+) m6A CDS       24284625 chr21:45380521-45380522(+) m6A exon//intron       24284625 chr21:45380553-45380554(+) m6A exon//intron       24284625 chr21:45380579-45380580(+) m6A exon//intron       24284625 chr21:45386628-45386629(+) m6A exon//intron       - chr21:45386751-45386752(+) m6A exon//intron       24284625//22608085 chr21:45386773-45386774(+) m6A exon//intron       24284625//22608085 chr21:45386841-45386842(+) m6A exon//intron       24284625//22608085 chr21:45386846-45386847(+) m6A exon//intron       24284625//22608085 chr21:45386900-45386901(+) m6A exon//intron       22608085 chr21:45386962-45386963(+) m6A exon//intron       22608085 chr21:45387027-45387028(+) m6A exon//intron       22608085 chr21:45387105-45387106(+) m6A exon//intron       25456834//22608085 chr21:45387127-45387128(+) m6A exon//intron       24284625//25456834//22608085 chr21:45387144-45387145(+) m6A exon//intron       24284625//25456834//22608085 chr21:45387163-45387164(+) m6A exon//intron       24284625//25456834//22608085 chr21:45387222-45387223(+) m6A exon//intron       22608085 chr21:45387942-45387943(+) Gm CDS//exon       - chr21:45389140-45389141(+) m6A CDS//exon       24284625//22575960 chr21:45390569-45390570(+) m6A CDS//exon       24284625//22575960 chr21:45390644-45390645(+) m6A CDS//exon       22575960 chr21:45400921-45400922(+) Y CDS//exon       26075521 chr21:45400944-45400945(+) m6A CDS//exon       24284625 chr21:45400954-45400955(+) m6A CDS//exon       24284625 chr21:45401075-45401076(+) m6A exon//intron       24284625//25456834//24981863//22575960//22608085 chr21:45401135-45401136(+) m6A exon//intron       24284625//25456834//24981863//22575960//22608085 chr21:45401187-45401188(+) m6A exon//intron       24284625//25456834//24981863//22575960//22608085 chr21:45402203-45402204(+) m6A CDS//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr21:45402247-45402248(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr21:45402290-45402291(+) m6A 3'UTR//exon       24284625//24981863//27773535//22575960//22608085 chr21:45402329-45402330(+) m6A 3'UTR//exon       24284625//24981863//27773535//22575960//22608085 chr21:45402354-45402355(+) m6A 3'UTR//exon       24284625//24981863//27773535//22575960//22608085 chr21:45402364-45402365(+) m6A 3'UTR//exon       24284625//24981863//27773535//22575960//22608085 chr21:45402402-45402403(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr21:45402545-45402546(+) m6A 3'UTR//exon       24284625//24981863//22575960//22608085 chr21:45402589-45402590(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr21:45402631-45402632(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr21:45402675-45402676(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr21:45403083-45403084(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr21:45403140-45403141(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr21:45403157-45403158(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr21:45403222-45403223(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr21:45403994-45403995(+) m6A 3'UTR       24284625 chr21:45404003-45404004(+) m6A 3'UTR       24284625 chr21:45404013-45404014(+) m6A 3'UTR       24284625 chr21:45404032-45404033(+) m6A 3'UTR       24284625 chr21:45404044-45404045(+) m6A 3'UTR       24284625 chr21:45405969-45405970(+) m6A 3'UTR       24284625//24981863 chr21:45406013-45406014(+) m6A 3'UTR       24284625//24981863 chr21:45406061-45406062(+) m6A 3'UTR       24284625//24981863//22608085 chr21:45406086-45406087(+) m6A 3'UTR       24284625//24981863//22608085 chr21:45406139-45406140(+) m6A 3'UTR       24284625//24981863//22608085 chr21:45406165-45406166(+) m6A 3'UTR       24284625//24981863//22608085 chr21:45406197-45406198(+) m6A 3'UTR       24284625//24981863//22608085 chr21:45406338-45406339(+) m6A 3'UTR       24284625//24981863//22608085 chr21:45406349-45406350(+) m6A 3'UTR       24284625//24981863//22608085 chr21:45406393-45406394(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	AGPAT3	Chromatin K562 cells     - Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: AGPAT3

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg