Basic Information:

  VIRBase ID:  

VHID00669134

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          STRBP:  NR_033234     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	STRBP
miRBase Accession/Entrez ID	MIMAT0009147	55342
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HEL162//ILF3L//p74//SPNR

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	STRBP	chr9:125960147(-) A-I      intronic chr9:125960155(-) A-I      intronic chr9:125977625(-) A-I      intronic chr9:125926492(-) A-I      intronic chr9:125926486(-) A-I      intronic chr9:125926401(-) A-I      intronic chr9:125994483(-) A-I      intronic chr9:125926493(-) A-I      intronic chr9:125947624(-) A-I      intronic chr9:125960157(-) A-I      intronic chr9:125931510(-) A-I      intronic chr9:126007780(-) A-I      intronic chr9:126007782(-) A-I      intronic chr9:126007797(-) A-I      intronic chr9:126007835(-) A-I      intronic chr9:126007841(-) A-I      intronic chr9:126007850(-) A-I      intronic chr9:125927503(-) A-I      intronic chr9:125929025(-) A-I      intronic chr9:125931717(-) A-I      intronic chr9:125994527(-) A-I      intronic chr9:125995450(-) A-I      intronic chr9:125996266(-) A-I      intronic chr9:125996315(-) A-I      intronic chr9:125996356(-) A-I      intronic chr9:125996358(-) A-I      intronic chr9:125996368(-) A-I      intronic chr9:126009671(-) A-I      intronic chr9:126010745(-) A-I      intronic chr9:126011820(-) A-I      intronic chr9:126018418(-) A-I      intronic chr9:126018548(-) A-I      intronic chr9:126019815(-) A-I      intronic chr9:126019850(-) A-I      intronic chr9:126020049(-) A-I      intronic chr9:125926363(-) A-I      intronic chr9:125899933(-) A-I      intronic chr9:125899865(-) A-I      intronic chr9:126007808(-) A-I      intronic chr9:125960122(-) A-I      intronic chr9:125960124(-) A-I      intronic chr9:125960129(-) A-I      intronic chr9:125960130(-) A-I      intronic chr9:125960133(-) A-I      intronic chr9:125926372(-) A-I      intronic chr9:125967172(-) A-I      intronic chr9:125978001(-) A-I      intronic chr9:126020039(-) A-I      intronic chr9:125969168(-) A-I      intronic chr9:125926387(-) A-I      intronic chr9:125926505(-) A-I      intronic chr9:125960118(-) A-I      intronic chr9:125926605(-) A-I      intronic chr9:125927412(-) A-I      intronic chr9:125927425(-) A-I      intronic chr9:125931544(-) A-I      intronic chr9:125931545(-) A-I      intronic chr9:125926527(-) A-I      intronic chr9:125926508(-) A-I      intronic chr9:125931585(-) A-I      intronic chr9:125931646(-) A-I      intronic chr9:125947625(-) A-I      intronic chr9:125960512(-) A-I      intronic chr9:125960516(-) A-I      intronic chr9:125960586(-) A-I      intronic chr9:125960587(-) A-I      intronic chr9:125960636(-) A-I      intronic chr9:125961345(-) A-I      intronic chr9:125961356(-) A-I      intronic chr9:125961362(-) A-I      intronic chr9:125965412(-) A-I      intronic chr9:125965429(-) A-I      intronic chr9:125965466(-) A-I      intronic chr9:125965591(-) A-I      intronic chr9:125969121(-) A-I      intronic chr9:125969154(-) A-I      intronic chr9:125973032(-) A-I      intronic chr9:125960596(-) A-I      intronic chr9:126018510(-) A-I      intronic chr9:126018435(-) A-I      intronic chr9:126016551(-) A-I      intronic chr9:126004791(-) A-I      intronic chr9:126010685(-) A-I      intronic chr9:125969124(-) A-I      intronic chr9:126013179(-) A-I      intronic chr9:126007736(-) A-I      intronic chr9:125924642(-) A-I      intronic chr9:126000470(-) A-I      intronic chr9:126000544(-) A-I      intronic chr9:125995645(-) A-I      intronic chr9:125962985(-) A-I      intronic chr9:125968990(-) A-I      intronic chr9:125928812(-) A-I      intronic chr9:125969090(-) A-I      intronic chr9:126009820(-) A-I      intronic chr9:125960588(-) A-I      intronic chr9:125977981(-) A-I      intronic chr9:126011656(-) A-I      intronic chr9:126018395(-) A-I      intronic chr9:126013338(-) A-I      intronic chr9:125969092(-) A-I      intronic chr9:125926441(-) A-I      intronic chr9:125927375(-) A-I      intronic chr9:125995500(-) A-I      intronic chr9:125990076(-) A-I      intronic chr9:126011914(-) A-I      intronic chr9:125994425(-) A-I      intronic chr9:126010643(-) A-I      intronic chr9:126013131(-) A-I      intronic chr9:125899791(-) A-I      intronic chr9:125977948(-) A-I      intronic chr9:125977872(-) A-I      intronic chr9:126019975(-) A-I      intronic chr9:125977535(-) A-I      intronic chr9:125990017(-) A-I      intronic chr9:125969055(-) A-I      intronic chr9:126011703(-) A-I      intronic chr9:125924576(-) A-I      intronic chr9:126018441(-) A-I      intronic chr9:126003276(-) A-I      intronic chr9:125965376(-) A-I      intronic chr9:125999301(-) A-I      intronic chr9:125994508(-) A-I      intronic chr9:126018551(-) A-I      intronic chr9:126011445(-) A-I      intronic chr9:126020020(-) A-I      intronic chr9:125927317(-) A-I      intronic chr9:126004852(-) A-I      intronic chr9:126009743(-) A-I      intronic chr9:125960091(-) A-I      intronic chr9:126010619(-) A-I      intronic chr9:126018522(-) A-I      intronic chr9:125995473(-) A-I      intronic chr9:126019981(-) A-I      intronic chr9:126009577(-) A-I      intronic chr9:126018496(-) A-I      intronic chr9:125927397(-) A-I      intronic chr9:125994428(-) A-I      intronic chr9:125965509(-) A-I      intronic chr9:125966188(-) A-I      intronic chr9:126016640(-) A-I      intronic chr9:126009780(-) A-I      intronic chr9:125927460(-) A-I      intronic chr9:125999230(-) A-I      5'UTR chr9:126009685(-) A-I      intronic chr9:125931669(-) A-I      intronic chr9:125995455(-) A-I      intronic chr9:125965415(-) A-I      intronic chr9:126011563(-) A-I      intronic chr9:126009658(-) A-I      intronic chr9:125996290(-) A-I      intronic chr9:125928981(-) A-I      intronic chr9:125960552(-) A-I      intronic chr9:126018340(-) A-I      intronic chr9:125926544(-) A-I      intronic chr9:125977816(-) A-I      intronic chr9:126011906(-) A-I      intronic chr9:125926430(-) A-I      intronic chr9:125965449(-) A-I      intronic chr9:125994374(-) A-I      intronic chr9:125978024(-) A-I      intronic chr9:125995490(-) A-I      intronic chr9:126009679(-) A-I      intronic chr9:125926593(-) A-I      intronic chr9:125977980(-) A-I      intronic chr9:126011536(-) A-I      intronic chr9:126018345(-) A-I      intronic chr9:125928816(-) A-I      intronic chr9:125928909(-) A-I      intronic chr9:125999291(-) A-I      intronic chr9:126007833(-) A-I      intronic chr9:125928971(-) A-I      intronic chr9:125994504(-) A-I      intronic chr9:126010821(-) A-I      intronic chr9:126011716(-) A-I      intronic chr9:125997047(-) A-I      intronic chr9:126009815(-) A-I      intronic chr9:126018394(-) A-I      intronic chr9:125926440(-) A-I      intronic chr9:126011439(-) A-I      intronic chr9:126013323(-) A-I      intronic chr9:126020013(-) A-I      intronic chr9:125999250(-) A-I      intronic chr9:125926545(-) A-I      intronic chr9:125973077(-) A-I      intronic chr9:126010684(-) A-I      intronic chr9:125995609(-) A-I      intronic chr9:126011644(-) A-I      intronic chr9:125995524(-) A-I      intronic chr9:125977611(-) A-I      intronic chr9:125927432(-) A-I      intronic chr9:125960166(-) A-I      intronic chr9:126009578(-) A-I      intronic chr9:125928885(-) A-I      intronic chr9:125967353(-) A-I      intronic chr9:125977553(-) A-I      intronic chr9:125965586(-) A-I      intronic chr9:125965513(-) A-I      intronic chr9:125978062(-) A-I      intronic chr9:126018387(-) A-I      intronic chr9:125924506(-) A-I      intronic chr9:126009614(-) A-I      intronic chr9:126011652(-) A-I      intronic chr9:126011558(-) A-I      intronic chr9:125999330(-) A-I      intronic chr9:125977512(-) A-I      intronic chr9:125997076(-) A-I      intronic chr9:125977414(-) A-I      intronic chr9:125994576(-) A-I      intronic chr9:125960225(-) A-I      intronic chr9:126018399(-) A-I      intronic chr9:125977461(-) A-I      intronic chr9:125967081(-) A-I      intronic chr9:125926598(-) A-I      intronic chr9:125990026(-) A-I      intronic chr9:125947674(-) A-I      intronic chr9:126000461(-) A-I      intronic chr9:125961419(-) A-I      intronic chr9:126001398(-) A-I      intronic chr9:125928870(-) A-I      intronic chr9:126013153(-) A-I      intronic chr9:126013284(-) A-I      intronic chr9:125962975(-) A-I      intronic chr9:125927394(-) A-I      intronic chr9:126004856(-) A-I      intronic chr9:125989989(-) A-I      intronic chr9:125965603(-) A-I      intronic chr9:125995586(-) A-I      intronic chr9:125965447(-) A-I      intronic chr9:125924770(-) A-I      intronic chr9:125960234(-) A-I      intronic chr9:126018514(-) A-I      intronic chr9:125926422(-) A-I      intronic chr9:125967423(-) A-I      intronic chr9:125924696(-) A-I      intronic chr9:125977478(-) A-I      intronic chr9:126011837(-) A-I      intronic chr9:125969120(-) A-I      intronic chr9:126018525(-) A-I      intronic chr9:126010614(-) A-I      intronic chr9:126018424(-) A-I      intronic chr9:125965625(-) A-I      intronic chr9:125924650(-) A-I      intronic chr9:126007933(-) A-I      intronic chr9:126013140(-) A-I      intronic chr9:125927305(-) A-I      intronic chr9:125965542(-) A-I      intronic chr9:125994463(-) A-I      intronic chr9:126010769(-) A-I      intronic chr9:126000483(-) A-I      intronic chr9:126011825(-) A-I      intronic chr9:125960136(-) A-I      intronic chr9:125962979(-) A-I      intronic chr9:126007932(-) A-I      intronic chr9:125994491(-) A-I      intronic chr9:126018497(-) A-I      intronic chr9:125977504(-) A-I      intronic chr9:125967091(-) A-I      intronic chr9:126007801(-) A-I      intronic chr9:126009742(-) A-I      intronic chr9:125969020(-) A-I      intronic chr9:125960121(-) A-I      intronic chr9:126011466(-) A-I      intronic chr9:125977454(-) A-I      intronic chr9:125967007(-) A-I      intronic chr9:126011860(-) A-I      intronic chr9:125995528(-) A-I      intronic chr9:125997163(-) A-I      intronic chr9:126018385(-) A-I      intronic chr9:126003293(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	STRBP	chr9:125887692(-) A-I exon 3'UTR    19478186 chr9:125969020(-) A-I intron -    15342557 chr9:125969042(-) A-I intron -    15342557 chr9:125969055(-) A-I intron -    15342557 chr9:125969056(-) A-I intron -    15342557 chr9:125969090(-) A-I intron -    15342557 chr9:125969092(-) A-I intron -    15342557 chr9:125969120(-) A-I intron -    15342557 chr9:125969124(-) A-I intron -    15342557 chr9:126018525(-) A-I intron -    21960545 chr9:125991649(-) T-C intron -    22484847 chr9:125924576(-) A-G intron -    22484847 chr9:125926489(-) A-G intron -    22484847 chr9:125926545(-) A-G intron -    22484847 chr9:125927375(-) A-G intron -    22484847 chr9:125927394(-) A-G intron -    22484847 chr9:125928909(-) A-G intron -    22484847 chr9:125977535(-) A-G intron -    22484847 chr9:125977948(-) A-G intron -    22484847 chr9:125977980(-) A-G intron -    22484847 chr9:125995524(-) A-G intron -    22484847 chr9:126007861(-) A-G intron -    22484847 chr9:126009679(-) A-G intron -    22484847 chr9:126009684(-) A-G intron -    22484847 chr9:126009685(-) A-G intron -    22484847 chr9:126010684(-) A-G intron -    22484847 chr9:126011837(-) A-G intron -    22484847 chr9:126018394(-) A-G intron -    22484847 chr9:126018525(-) A-G intron -    22484847 chr9:126019981(-) A-G intron -    22484847 chr9:126020020(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	STRBP	chr9:125871797-125871798(-) m6A 3'UTR//exon       28052920//27773535 chr9:125871876-125871877(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//22608085 chr9:125871888-125871889(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//22608085 chr9:125871953-125871954(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr9:125872039-125872040(-) m6A intron       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr9:125872046-125872047(-) m6A intron       24284625//24981863//28052920//27773535//22575960//22608085 chr9:125872053-125872054(-) m6A intron       24284625//24981863//28052920//27773535//22575960//22608085 chr9:125872090-125872091(-) m6A intron       24284625//24981863//28052920//27773535//22608085 chr9:125872106-125872107(-) m6A intron       24284625//24981863//27773535//22608085 chr9:125872115-125872116(-) m6A intron       24284625//24981863//27773535//22608085 chr9:125874418-125874419(-) m6A intron       24284625//27773536 chr9:125874491-125874492(-) m6A intron       24284625//27773536 chr9:125876589-125876590(-) m6A intron       - chr9:125876596-125876597(-) m6A intron       - chr9:125877022-125877023(-) m6A intron       24284625//27773535 chr9:125877049-125877050(-) m6A intron       24284625//27773535 chr9:125877072-125877073(-) m6A intron       24284625 chr9:125877099-125877100(-) m6A intron       24284625 chr9:125877288-125877289(-) m6A intron       24284625//27773535 chr9:125877306-125877307(-) m6A intron       24284625//27773535 chr9:125878153-125878154(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr9:125878236-125878237(-) m6A 3'UTR//intron       24981863//27773535 chr9:125878265-125878266(-) m6A 3'UTR//intron       24981863//27773535 chr9:125878305-125878306(-) m6A CDS//intron       27773535 chr9:125898694-125898695(-) m6A 3'UTR//CDS//exon       24981863 chr9:125898707-125898708(-) m6A 3'UTR//CDS//exon       24981863 chr9:125898753-125898754(-) m6A 3'UTR//CDS//exon       24981863 chr9:125932322-125932323(-) m6A 3'UTR//CDS       24981863 chr9:125935999-125936000(-) m6A 3'UTR//CDS       24981863//27371828 chr9:125936013-125936014(-) m6A 3'UTR//CDS       24981863//27371828 chr9:125936040-125936041(-) m6A 3'UTR//CDS       24981863//28052920//27371828 chr9:125936104-125936105(-) m6A CDS       24981863//28052920//27371828 chr9:125941294-125941295(-) m6A CDS       24981863//28052920//27371828 chr9:125941325-125941326(-) m6A CDS       24981863//28052920//27371828 chr9:125941337-125941338(-) m6A CDS       24981863 chr9:125941355-125941356(-) m6A CDS       24981863 chr9:125943189-125943190(-) m6A 5'UTR//intron       24981863 chr9:125943229-125943230(-) m6A 5'UTR//intron       24981863 chr9:125943243-125943244(-) m6A 5'UTR//intron       24981863 chr9:125943249-125943250(-) m6A 5'UTR//intron       24981863//27773535 chr9:125946415-125946416(-) m6A 5'UTR       24981863//27773535 chr9:125946484-125946485(-) m6A 5'UTR       24981863//27773535//27371828 chr9:125946517-125946518(-) m6A 5'UTR       24209618//24981863//27773535//27371828 chr9:125946550-125946551(-) m6A 5'UTR       24209618//27773535//27371828 chr9:125946562-125946563(-) m6A 5'UTR       24209618//27773535//27371828 chr9:125974883-125974884(-) m6A 5'UTR//intron       24209618//27773535 chr9:125999207-125999208(-) m6A 5'UTR//intron       25456834//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	STRBP	Chromatin HCC cell line (HepG2)|K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: STRBP

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg