Detail Information

Basic Information:


  VIRBase ID:  

VHID00669072

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:           ATG2B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-5p ATG2B
miRBase
Accession/Entrez ID		 MIMAT0009147 55102
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - C14orf103

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ATG2B
chr14:96783648(-) A-I      NonSyn:Glu->Gly
chr14:96821344(-) A-I      intronic
chr14:96821340(-) A-I      intronic
chr14:96821337(-) A-I      intronic
chr14:96821316(-) A-I      intronic
chr14:96821315(-) A-I      intronic
chr14:96821305(-) A-I      intronic
chr14:96762429(-) A-I      intronic
chr14:96762447(-) A-I      intronic
chr14:96762986(-) A-I      intronic
chr14:96763015(-) A-I      intronic
chr14:96763016(-) A-I      intronic
chr14:96763041(-) A-I      intronic
chr14:96763059(-) A-I      intronic
chr14:96763022(-) A-I      intronic
chr14:96764378(-) A-I      intronic
chr14:96763930(-) A-I      intronic
chr14:96764405(-) A-I      intronic
chr14:96793529(-) A-I      intronic
chr14:96762423(-) A-I      intronic
chr14:96762419(-) A-I      intronic
chr14:96805775(-) A-I      intronic
chr14:96805774(-) A-I      intronic
chr14:96805852(-) A-I      intronic
chr14:96763873(-) A-I      intronic
chr14:96763938(-) A-I      intronic
chr14:96785609(-) A-I      intronic
chr14:96762762(-) A-I      intronic
chr14:96762455(-) A-I      intronic
chr14:96764404(-) A-I      intronic
chr14:96762842(-) A-I      intronic
chr14:96805692(-) A-I      intronic
chr14:96763872(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ATG2B
chr14:96805775(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ATG2B
chr14:96750066-96750067(-) m6A 3'UTR       27773535
chr14:96750157-96750158(-) m6A 3'UTR       27773535
chr14:96750578-96750579(-) Y 3'UTR       26075521
chr14:96751395-96751396(-) m6A 3'UTR       27773535
chr14:96751517-96751518(-) m6A 3'UTR       27773535
chr14:96751581-96751582(-) m6A 3'UTR       24981863//27773535//22608085
chr14:96751682-96751683(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr14:96751703-96751704(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr14:96751928-96751929(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22575960//22608085
chr14:96751945-96751946(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22575960//22608085
chr14:96751982-96751983(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22575960//22608085
chr14:96752052-96752053(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr14:96752081-96752082(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr14:96752152-96752153(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr14:96752205-96752206(-) m6A CDS       24284625//24981863//27773535//22608085
chr14:96756035-96756036(-) m6A CDS//exon       27773535
chr14:96756078-96756079(-) m6A CDS//exon       27773535
chr14:96756129-96756130(-) m6A CDS//exon       27773535
chr14:96808006-96808007(-) m6A CDS       27773535
chr14:96808034-96808035(-) m6A CDS       27773535
chr14:96829556-96829557(-) m6A 5'UTR       24981863//27773536
chr14:96829795-96829796(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-5p
Nucleus PML tissue     32324824
ATG2B
Chromatin K562 cells     -
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-5p
Interactor2: ATG2B

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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