Detail Information

Basic Information:


  VIRBase ID:  

VHID00668664

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:           KLHL3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-5p KLHL3
miRBase
Accession/Entrez ID		 MIMAT0009147 26249
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - PHA2D

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KLHL3
chr5:136978959(-) A-I      intronic
chr5:136978946(-) A-I      intronic
chr5:137018889(-) A-I      intronic
chr5:136980234(-) A-I      intronic
chr5:136980197(-) A-I      intronic
chr5:136980205(-) A-I      intronic
chr5:136980210(-) A-I      intronic
chr5:136980194(-) A-I      intronic
chr5:137018895(-) A-I      intronic
chr5:137018906(-) A-I      intronic
chr5:137018905(-) A-I      intronic
chr5:137018902(-) A-I      intronic
chr5:136980211(-) A-I      intronic
chr5:137018876(-) A-I      intronic
chr5:136980265(-) A-I      intronic
chr5:137016640(-) A-I      intronic
chr5:137032893(-) A-I      intronic
chr5:137043000(-) A-I      intronic
chr5:136980227(-) A-I      intronic
chr5:136979952(-) A-I      intronic
chr5:136998883(-) A-I      intronic
chr5:137018850(-) A-I      intronic
chr5:137018875(-) A-I      intronic
chr5:136980245(-) A-I      intronic
chr5:136979947(-) A-I      intronic
chr5:136979932(-) A-I      intronic
chr5:136979928(-) A-I      intronic
chr5:136980206(-) A-I      intronic
chr5:137012915(-) A-I      intronic
chr5:136998844(-) A-I      intronic
chr5:137016612(-) A-I      intronic
chr5:136998814(-) A-I      intronic
chr5:136978792(-) A-I      intronic
chr5:136988697(-) A-I      3'UTR
chr5:136988738(-) A-I      3'UTR
chr5:136988742(-) A-I      3'UTR
chr5:136998923(-) A-I      intronic
chr5:137016677(-) A-I      intronic
chr5:136998815(-) A-I      intronic
chr5:136978919(-) A-I      intronic
chr5:137016665(-) A-I      intronic
chr5:136978932(-) A-I      intronic
chr5:137058634(-) A-I      intronic
chr5:136988817(-) A-I      intronic
chr5:137012879(-) A-I      intronic
chr5:137000425(-) A-I      intronic
chr5:136979896(-) A-I      intronic
chr5:136979787(-) A-I      intronic
chr5:136979829(-) A-I      intronic
chr5:136980032(-) A-I      intronic
chr5:136978913(-) A-I      intronic
chr5:137016670(-) A-I      intronic
chr5:136979895(-) A-I      intronic
chr5:137000385(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KLHL3
chr5:136988455(-) A-I intron -    15342557
chr5:136988463(-) A-I intron -    15342557
chr5:136988484(-) A-I intron -    15342557
chr5:136988509(-) A-I intron -    15342557
chr5:136988697(-) A-I intron -    15342557
chr5:136988738(-) A-I intron -    15342557
chr5:136988742(-) A-I intron -    15342557
chr5:137028029(-) A-I exon CDS    15342557
chr5:136988335(-) A-G intron -    22484847
chr5:136978932(-) A-G intron -    22484847
chr5:136998844(-) A-G intron -    22484847
chr5:137016665(-) A-G intron -    22484847
chr5:137016670(-) A-G intron -    22484847
chr5:137016677(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KLHL3
chr5:136953197-136953198(-) m6A 3'UTR       27773535
chr5:136953540-136953541(-) m6A 3'UTR//exon       27773535
chr5:136953649-136953650(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr5:136953697-136953698(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr5:136955869-136955870(-) m6A 3'UTR//intron       27773535
chr5:136955932-136955933(-) m6A 3'UTR//intron       27773535
chr5:136955983-136955984(-) m6A 3'UTR//intron       27773535
chr5:136955988-136955989(-) m6A 3'UTR//intron       27773535
chr5:136956071-136956072(-) m6A 3'UTR//intron       24284625//27773535
chr5:136956145-136956146(-) m6A 3'UTR//intron       24284625//27773535
chr5:136956167-136956168(-) m6A 3'UTR//intron       24284625//27773535
chr5:136956210-136956211(-) m6A 3'UTR//intron       24284625//27773535
chr5:136956902-136956903(-) m6A 3'UTR//intron       27773535
chr5:136956909-136956910(-) m6A 3'UTR//exon//intron       27773535
chr5:136956920-136956921(-) m6A 3'UTR//exon//intron       27773535
chr5:136956926-136956927(-) m6A 3'UTR//exon//intron       27773535
chr5:136956931-136956932(-) m6A 3'UTR//exon//intron       27773535
chr5:136957281-136957282(-) m6A 3'UTR//exon//intron       27773535
chr5:136957317-136957318(-) m6A 3'UTR//exon//intron       27773535
chr5:136957325-136957326(-) m6A 3'UTR//exon//intron       27773535
chr5:136957353-136957354(-) m6A 3'UTR//exon//intron       27773535
chr5:136957621-136957622(-) m6A 3'UTR//exon//intron       25456834//24981863
chr5:136957646-136957647(-) m6A 3'UTR//exon//intron       25456834//24981863
chr5:136957669-136957670(-) m6A 3'UTR//exon//intron       25456834//24981863
chr5:136957720-136957721(-) m6A 3'UTR//exon//intron       25456834
chr5:136957728-136957729(-) m6A 3'UTR//exon//intron       25456834
chr5:136957780-136957781(-) m6A 3'UTR//exon//intron       25456834
chr5:136973020-136973021(-) m6A CDS//intron       27773535
chr5:136973051-136973052(-) m6A CDS//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-5p
Nucleus PML tissue     32324824
KLHL3
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-5p
Interactor2: KLHL3

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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