Basic Information:

  VIRBase ID:  

VHID00668621

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          CHMP2B:  NM_001244644     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	CHMP2B
miRBase Accession/Entrez ID	MIMAT0009147	25978
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ALS17//CHMP2.5//DMT1//FTDALS7//VPS2-2//VPS2B

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CHMP2B	chr3:87295349(+) A-I      intronic chr3:87297564(+) A-I      intronic chr3:87297588(+) A-I      intronic chr3:87297533(+) A-I      intronic chr3:87297288(+) A-I      intronic chr3:87297233(+) A-I      intronic chr3:87297296(+) A-I      intronic chr3:87297622(+) A-I      intronic chr3:87295445(+) A-I      intronic chr3:87297624(+) A-I      intronic chr3:87297294(+) A-I      intronic chr3:87304219(+) A-I      3'UTR chr3:87297328(+) A-I      intronic chr3:87297400(+) A-I      intronic chr3:87295485(+) A-I      intronic chr3:87297289(+) A-I      intronic chr3:87297636(+) A-I      intronic chr3:87297301(+) A-I      intronic chr3:87297721(+) A-I      intronic chr3:87297193(+) A-I      intronic chr3:87297298(+) A-I      intronic chr3:87297735(+) A-I      intronic chr3:87297238(+) A-I      intronic chr3:87297690(+) A-I      intronic chr3:87297572(+) A-I      intronic chr3:87297704(+) A-I      intronic chr3:87297355(+) A-I      intronic chr3:87297398(+) A-I      intronic chr3:87297333(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CHMP2B	chr3:87289600(+) A-G intron -    22484847 chr3:87297286(+) A-G intron -    22484847 chr3:87297572(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CHMP2B	chr3:87276581-87276582(+) m6A 5'UTR       25456834//24981863//22575960 chr3:87276633-87276634(+) m6A 5'UTR       25456834//24981863//22575960 chr3:87289861-87289862(+) m6A CDS//intron       24981863 chr3:87289924-87289925(+) m6A CDS//intron       24981863 chr3:87289933-87289934(+) m6A CDS//intron       24981863 chr3:87294925-87294926(+) m6A CDS       24981863//27773535 chr3:87294946-87294947(+) m6A CDS       24981863//27773535 chr3:87294959-87294960(+) m6A CDS       24981863//27773535 chr3:87295001-87295002(+) m6A CDS//intron       24981863//27773535 chr3:87299063-87299064(+) m6A CDS       24981863//27773535 chr3:87299072-87299073(+) m6A CDS       24981863//26404942//27773535 chr3:87299097-87299098(+) m6A CDS       24981863//26404942//27773535 chr3:87304250-87304251(+) m6A 3'UTR       27773535 chr3:87304292-87304293(+) m6A 3'UTR       26404942//27773535 chr3:87304328-87304329(+) m6A 3'UTR       26404942//27773535 chr3:87304369-87304370(+) m6A 3'UTR       27773535 chr3:87304374-87304375(+) m6A 3'UTR       27773535 chr3:87304397-87304398(+) m6A 3'UTR       27773535 chr3:87304478-87304479(+) m6A 3'UTR       27773535 chr3:87304510-87304511(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	CHMP2B	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: CHMP2B

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg