Detail Information

Basic Information:


  VIRBase ID:  

VHID00668518

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:           NUDCD3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-5p NUDCD3
miRBase
Accession/Entrez ID		 MIMAT0009147 23386
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - NudCL

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NUDCD3
chr7:44491940(-) A-I      intronic
chr7:44471786(-) A-I      intronic
chr7:44471759(-) A-I      intronic
chr7:44471715(-) A-I      intronic
chr7:44471690(-) A-I      intronic
chr7:44471513(-) A-I      intronic
chr7:44471391(-) A-I      intronic
chr7:44467959(-) A-I      intronic
chr7:44465317(-) A-I      intronic
chr7:44465245(-) A-I      intronic
chr7:44455767(-) A-I      intronic
chr7:44455705(-) A-I      intronic
chr7:44453571(-) A-I      intronic
chr7:44518004(-) A-I      intronic
chr7:44517529(-) A-I      intronic
chr7:44491952(-) A-I      intronic
chr7:44429839(-) A-I      intronic
chr7:44453567(-) A-I      intronic
chr7:44453434(-) A-I      intronic
chr7:44450539(-) A-I      intronic
chr7:44445644(-) A-I      intronic
chr7:44445601(-) A-I      intronic
chr7:44445556(-) A-I      intronic
chr7:44518040(-) A-I      intronic
chr7:44518069(-) A-I      intronic
chr7:44520324(-) A-I      intronic
chr7:44517600(-) A-I      intronic
chr7:44493518(-) A-I      intronic
chr7:44493533(-) A-I      intronic
chr7:44429881(-) A-I      intronic
chr7:44445563(-) A-I      intronic
chr7:44493534(-) A-I      intronic
chr7:44442943(-) A-I      intronic
chr7:44426904(-) A-I      intronic
chr7:44426828(-) A-I      intronic
chr7:44493559(-) A-I      intronic
chr7:44493560(-) A-I      intronic
chr7:44493566(-) A-I      intronic
chr7:44494471(-) A-I      intronic
chr7:44494494(-) A-I      intronic
chr7:44498793(-) A-I      intronic
chr7:44498944(-) A-I      intronic
chr7:44499005(-) A-I      intronic
chr7:44499033(-) A-I      intronic
chr7:44514800(-) A-I      intronic
chr7:44514893(-) A-I      intronic
chr7:44515224(-) A-I      intronic
chr7:44515237(-) A-I      intronic
chr7:44515247(-) A-I      intronic
chr7:44515259(-) A-I      intronic
chr7:44517664(-) A-I      intronic
chr7:44517683(-) A-I      intronic
chr7:44515277(-) A-I      intronic
chr7:44515332(-) A-I      intronic
chr7:44517509(-) A-I      intronic
chr7:44527777(-) A-I      intronic
chr7:44483125(-) A-I      intronic
chr7:44471769(-) A-I      intronic
chr7:44489892(-) A-I      intronic
chr7:44498922(-) A-I      intronic
chr7:44445595(-) A-I      intronic
chr7:44471404(-) A-I      intronic
chr7:44453395(-) A-I      intronic
chr7:44498148(-) A-I      intronic
chr7:44517601(-) A-I      intronic
chr7:44517995(-) A-I      intronic
chr7:44445677(-) A-I      intronic
chr7:44515276(-) A-I      intronic
chr7:44471765(-) A-I      intronic
chr7:44490140(-) A-I      intronic
chr7:44465421(-) A-I      intronic
chr7:44517607(-) A-I      intronic
chr7:44514808(-) A-I      intronic
chr7:44498194(-) A-I      intronic
chr7:44517928(-) A-I      intronic
chr7:44465316(-) A-I      intronic
chr7:44445560(-) A-I      intronic
chr7:44498135(-) A-I      intronic
chr7:44498876(-) A-I      intronic
chr7:44445540(-) A-I      intronic
chr7:44455785(-) A-I      intronic
chr7:44498047(-) A-I      intronic
chr7:44517906(-) A-I      intronic
chr7:44426898(-) A-I      intronic
chr7:44471409(-) A-I      intronic
chr7:44490044(-) A-I      intronic
chr7:44517984(-) A-I      intronic
chr7:44453554(-) A-I      intronic
chr7:44504201(-) A-I      intronic
chr7:44498218(-) A-I      intronic
chr7:44517597(-) A-I      intronic
chr7:44450403(-) A-I      intronic
chr7:44527771(-) A-I      intronic
chr7:44517705(-) A-I      intronic
chr7:44515296(-) A-I      intronic
chr7:44455721(-) A-I      intronic
chr7:44517538(-) A-I      intronic
chr7:44453522(-) A-I      intronic
chr7:44499000(-) A-I      intronic
chr7:44498837(-) A-I      intronic
chr7:44455766(-) A-I      intronic
chr7:44429880(-) A-I      intronic
chr7:44489928(-) A-I      intronic
chr7:44498882(-) A-I      intronic
chr7:44452941(-) A-I      intronic
chr7:44517544(-) A-I      intronic
chr7:44499037(-) A-I      intronic
chr7:44514879(-) A-I      intronic
chr7:44445624(-) A-I      intronic
chr7:44517530(-) A-I      intronic
chr7:44498024(-) A-I      intronic
chr7:44445577(-) A-I      intronic
chr7:44471875(-) A-I      intronic
chr7:44452953(-) A-I      intronic
chr7:44517893(-) A-I      intronic
chr7:44453542(-) A-I      intronic
chr7:44453578(-) A-I      intronic
chr7:44465244(-) A-I      intronic
chr7:44515242(-) A-I      intronic
chr7:44445534(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NUDCD3
chr7:44426628(-) A-I intron -    19478186
chr7:44426828(-) A-I intron -    21960545
chr7:44500798(-) A-G intron -    22484847
chr7:44500815(-) A-G intron -    22484847
chr7:44445595(-) A-G intron -    22484847
chr7:44445624(-) A-G intron -    22484847
chr7:44445677(-) A-G intron -    22484847
chr7:44445679(-) A-G intron -    22484847
chr7:44452839(-) A-G intron -    22484847
chr7:44452953(-) A-G intron -    22484847
chr7:44453578(-) A-G intron -    22484847
chr7:44465421(-) A-G intron -    22484847
chr7:44471404(-) A-G intron -    22484847
chr7:44471661(-) A-G intron -    22484847
chr7:44471765(-) A-G intron -    22484847
chr7:44471835(-) A-G intron -    22484847
chr7:44471875(-) A-G intron -    22484847
chr7:44490044(-) A-G intron -    22484847
chr7:44490140(-) A-G intron -    22484847
chr7:44498024(-) A-G intron -    22484847
chr7:44498133(-) A-G intron -    22484847
chr7:44498135(-) A-G intron -    22484847
chr7:44498148(-) A-G intron -    22484847
chr7:44498157(-) A-G intron -    22484847
chr7:44498194(-) A-G intron -    22484847
chr7:44498218(-) A-G intron -    22484847
chr7:44498252(-) A-G intron -    22484847
chr7:44498876(-) A-G intron -    22484847
chr7:44498936(-) A-G intron -    22484847
chr7:44514807(-) A-G intron -    22484847
chr7:44514808(-) A-G intron -    22484847
chr7:44514849(-) A-G intron -    22484847
chr7:44515242(-) A-G intron -    22484847
chr7:44515276(-) A-G intron -    22484847
chr7:44515296(-) A-G intron -    22484847
chr7:44515302(-) A-G intron -    22484847
chr7:44517601(-) A-G intron -    22484847
chr7:44517607(-) A-G intron -    22484847
chr7:44517893(-) A-G intron -    22484847
chr7:44517906(-) A-G intron -    22484847
chr7:44517928(-) A-G intron -    22484847
chr7:44517984(-) A-G intron -    22484847
chr7:44517995(-) A-G intron -    22484847
chr7:44518076(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NUDCD3
chr7:44421986-44421987(-) m6A 3'UTR       25456834//24981863//27773535
chr7:44421991-44421992(-) m6A 3'UTR       25456834//24981863//27773535
chr7:44422044-44422045(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr7:44422090-44422091(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr7:44422143-44422144(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773536//22608085
chr7:44422155-44422156(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773536//22608085
chr7:44422209-44422210(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr7:44422265-44422266(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr7:44422285-44422286(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr7:44422334-44422335(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr7:44422404-44422405(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr7:44422420-44422421(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr7:44422434-44422435(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr7:44422494-44422495(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27773536//22608085
chr7:44422600-44422601(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr7:44422635-44422636(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:44422640-44422641(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr7:44422772-44422773(-) m6A 3'UTR       27773535
chr7:44423354-44423355(-) m6A 3'UTR//exon       24284625
chr7:44423404-44423405(-) m6A 3'UTR//exon//intron       24284625
chr7:44423537-44423538(-) m6A 3'UTR//exon//intron       24284625//24981863
chr7:44423595-44423596(-) m6A 3'UTR//exon//intron       24284625//24981863
chr7:44423602-44423603(-) m6A 3'UTR//exon//intron       24284625//24981863
chr7:44423924-44423925(-) m6A 3'UTR//exon//intron       24284625
chr7:44424090-44424091(-) m6A 3'UTR//exon//intron       24284625//24981863
chr7:44424447-44424448(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr7:44424518-44424519(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:44424536-44424537(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:44424568-44424569(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:44424583-44424584(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:44424618-44424619(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr7:44424635-44424636(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr7:44424766-44424767(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:44424882-44424883(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr7:44425006-44425007(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22608085
chr7:44425111-44425112(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//22608085
chr7:44425206-44425207(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//22608085
chr7:44425444-44425445(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr7:44425477-44425478(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr7:44425524-44425525(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22575960//22608085
chr7:44425590-44425591(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//27371828
chr7:44431953-44431954(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828//27773536
chr7:44431967-44431968(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828//27773536//22575960
chr7:44432079-44432080(-) m6A CDS//exon//intron       24284625//27773535//27371828//22575960
chr7:44442307-44442308(-) m6A exon//intron       27773535
chr7:44452812-44452813(-) m6A exon//intron       24209618
chr7:44524783-44524784(-) m6A CDS//exon       24284625//27371828
chr7:44524808-44524809(-) Am CDS//exon       -
chr7:44524826-44524827(-) m6A CDS//exon       24284625//27773535//27371828
chr7:44524873-44524874(-) m6A CDS//exon       24284625//27773535//27371828
chr7:44525152-44525153(-) m6A exon//intron       24284625//27773535//27371828
chr7:44525182-44525183(-) m6A exon//intron       24284625//27773535//27371828
chr7:44525187-44525188(-) m6A exon//intron       24284625//27773535//27371828
chr7:44525210-44525211(-) m6A exon//intron       24284625//27371828
chr7:44529552-44529553(-) m6A exon//intron       24981863//27773535//22608085
chr7:44529636-44529637(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr7:44529646-44529647(-) m6A exon//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr7:44529680-44529681(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085
chr7:44529692-44529693(-) m6A exon//intron       24284625//24209618//24981863//27773535//22608085
chr7:44530053-44530054(-) m6A CDS//exon       24284625//24209618//24981863//22575960
chr7:44530087-44530088(-) m6A CDS//exon       24284625//24209618//24981863//27371828//22575960
chr7:44530192-44530193(-) m6A CDS//exon       24284625//24981863//27371828//27773536//22575960
chr7:44530318-44530319(-) m6A 5'UTR       27371828//27773536
chr7:44530352-44530353(-) m6A 5'UTR       27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-5p
Nucleus PML tissue     32324824
NUDCD3
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-5p
Interactor2: NUDCD3

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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