Basic Information:

  VIRBase ID:  

VHID00668475

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          CLEC16A:  NM_015226     

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Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	CLEC16A
miRBase Accession/Entrez ID	MIMAT0009147	23274
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Gop-1//KIAA0350

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CLEC16A	chr16:11215622(+) A-I      intronic chr16:11250073(+) A-I      intronic chr16:11250070(+) A-I      intronic chr16:11250065(+) A-I      intronic chr16:11250056(+) A-I      intronic chr16:11250053(+) A-I      intronic chr16:11215687(+) A-I      intronic chr16:11215671(+) A-I      intronic chr16:11215662(+) A-I      intronic chr16:11110455(+) A-I      intronic chr16:11113564(+) A-I      intronic chr16:11263218(+) A-I      intronic chr16:11215658(+) A-I      intronic chr16:11215626(+) A-I      intronic chr16:11184866(+) A-I      intronic chr16:11171250(+) A-I      intronic chr16:11171227(+) A-I      intronic chr16:11087084(+) A-I      intronic chr16:11087078(+) A-I      intronic chr16:11064773(+) A-I      intronic chr16:11215669(+) A-I      intronic chr16:11215649(+) A-I      intronic chr16:11069034(+) A-I      intronic chr16:11069743(+) A-I      intronic chr16:11069867(+) A-I      intronic chr16:11070109(+) A-I      intronic chr16:11070110(+) A-I      intronic chr16:11070112(+) A-I      intronic chr16:11078785(+) A-I      intronic chr16:11078803(+) A-I      intronic chr16:11078804(+) A-I      intronic chr16:11080013(+) A-I      intronic chr16:11080017(+) A-I      intronic chr16:11080094(+) A-I      intronic chr16:11107388(+) A-I      intronic chr16:11107402(+) A-I      intronic chr16:11107421(+) A-I      intronic chr16:11107472(+) A-I      intronic chr16:11107676(+) A-I      intronic chr16:11107775(+) A-I      intronic chr16:11110310(+) A-I      intronic chr16:11110323(+) A-I      intronic chr16:11110390(+) A-I      intronic chr16:11110422(+) A-I      intronic chr16:11112526(+) A-I      intronic chr16:11112590(+) A-I      intronic chr16:11112594(+) A-I      intronic chr16:11112596(+) A-I      intronic chr16:11113371(+) A-I      intronic chr16:11113416(+) A-I      intronic chr16:11113420(+) A-I      intronic chr16:11113475(+) A-I      intronic chr16:11113496(+) A-I      intronic chr16:11113505(+) A-I      intronic chr16:11113515(+) A-I      intronic chr16:11115489(+) A-I      intronic chr16:11115549(+) A-I      intronic chr16:11146877(+) A-I      intronic chr16:11146953(+) A-I      intronic chr16:11146958(+) A-I      intronic chr16:11146962(+) A-I      intronic chr16:11163008(+) A-I      intronic chr16:11163097(+) A-I      intronic chr16:11163124(+) A-I      intronic chr16:11163207(+) A-I      intronic chr16:11163224(+) A-I      intronic chr16:11163336(+) A-I      intronic chr16:11163591(+) A-I      intronic chr16:11164089(+) A-I      intronic chr16:11164110(+) A-I      intronic chr16:11164119(+) A-I      intronic chr16:11166078(+) A-I      intronic chr16:11166079(+) A-I      intronic chr16:11166176(+) A-I      intronic chr16:11168774(+) A-I      intronic chr16:11168775(+) A-I      intronic chr16:11168791(+) A-I      intronic chr16:11168820(+) A-I      intronic chr16:11168848(+) A-I      intronic chr16:11169475(+) A-I      intronic chr16:11169477(+) A-I      intronic chr16:11169514(+) A-I      intronic chr16:11169570(+) A-I      intronic chr16:11171077(+) A-I      intronic chr16:11171235(+) A-I      intronic chr16:11171279(+) A-I      intronic chr16:11171698(+) A-I      intronic chr16:11171720(+) A-I      intronic chr16:11171747(+) A-I      intronic chr16:11184099(+) A-I      intronic chr16:11184847(+) A-I      intronic chr16:11184877(+) A-I      intronic chr16:11184891(+) A-I      intronic chr16:11186007(+) A-I      intronic chr16:11186016(+) A-I      intronic chr16:11186017(+) A-I      intronic chr16:11186051(+) A-I      intronic chr16:11195738(+) A-I      intronic chr16:11197253(+) A-I      intronic chr16:11197330(+) A-I      intronic chr16:11198065(+) A-I      intronic chr16:11198091(+) A-I      intronic chr16:11198092(+) A-I      intronic chr16:11198223(+) A-I      intronic chr16:11202825(+) A-I      intronic chr16:11203070(+) A-I      intronic chr16:11209329(+) A-I      intronic chr16:11209504(+) A-I      intronic chr16:11231545(+) A-I      intronic chr16:11231559(+) A-I      intronic chr16:11231594(+) A-I      intronic chr16:11259116(+) A-I      intronic chr16:11266625(+) A-I      intronic chr16:11266658(+) A-I      intronic chr16:11266666(+) A-I      intronic chr16:11266667(+) A-I      intronic chr16:11270352(+) A-I      intronic chr16:11270353(+) A-I      intronic chr16:11053690(+) A-I      intronic chr16:11203078(+) A-I      intronic chr16:11203285(+) A-I      intronic chr16:11113440(+) A-I      intronic chr16:11052650(+) A-I      intronic chr16:11112033(+) A-I      intronic chr16:11186098(+) A-I      intronic chr16:11175809(+) A-I      intronic chr16:11056838(+) A-I      intronic chr16:11158487(+) A-I      intronic chr16:11266615(+) A-I      intronic chr16:11198220(+) A-I      intronic chr16:11266491(+) A-I      intronic chr16:11266674(+) A-I      intronic chr16:11110345(+) A-I      intronic chr16:11171435(+) A-I      intronic chr16:11169433(+) A-I      intronic chr16:11067820(+) A-I      intronic chr16:11195870(+) A-I      intronic chr16:11107372(+) A-I      intronic chr16:11189782(+) A-I      intronic chr16:11107230(+) A-I      intronic chr16:11203122(+) A-I      intronic chr16:11112351(+) A-I      intronic chr16:11206401(+) A-I      intronic chr16:11116166(+) A-I      intronic chr16:11068023(+) A-I      intronic chr16:11069524(+) A-I      intronic chr16:11146909(+) A-I      intronic chr16:11202847(+) A-I      intronic chr16:11171182(+) A-I      intronic chr16:11067555(+) A-I      intronic chr16:11107366(+) A-I      intronic chr16:11107310(+) A-I      intronic chr16:11107397(+) A-I      intronic chr16:11107375(+) A-I      intronic chr16:11107393(+) A-I      intronic chr16:11171071(+) A-I      intronic chr16:11103949(+) A-I      intronic chr16:11107315(+) A-I      intronic chr16:11169515(+) A-I      intronic chr16:11087085(+) A-I      intronic chr16:11113495(+) A-I      intronic chr16:11107271(+) A-I      intronic chr16:11107273(+) A-I      intronic chr16:11107302(+) A-I      intronic chr16:11110335(+) A-I      intronic chr16:11195917(+) A-I      intronic chr16:11171268(+) A-I      intronic chr16:11107231(+) A-I      intronic chr16:11203062(+) A-I      intronic chr16:11209969(+) A-I      intronic chr16:11185925(+) A-I      intronic chr16:11110445(+) A-I      intronic chr16:11112485(+) A-I      intronic chr16:11207460(+) A-I      intronic chr16:11107548(+) A-I      intronic chr16:11056750(+) A-I      intronic chr16:11112352(+) A-I      intronic chr16:11107780(+) A-I      intronic chr16:11110286(+) A-I      intronic chr16:11111950(+) A-I      intronic chr16:11266560(+) A-I      intronic chr16:11184871(+) A-I      intronic chr16:11110413(+) A-I      intronic chr16:11115534(+) A-I      intronic chr16:11168772(+) A-I      intronic chr16:11186296(+) A-I      intronic chr16:11107360(+) A-I      intronic chr16:11210154(+) A-I      intronic chr16:11149545(+) A-I      intronic chr16:11263418(+) A-I      intronic chr16:11169479(+) A-I      intronic chr16:11069526(+) A-I      intronic chr16:11111983(+) A-I      intronic chr16:11171377(+) A-I      intronic chr16:11210132(+) A-I      intronic chr16:11266490(+) A-I      intronic chr16:11197358(+) A-I      intronic chr16:11171094(+) A-I      intronic chr16:11103945(+) A-I      intronic chr16:11070102(+) A-I      intronic chr16:11165998(+) A-I      intronic chr16:11103739(+) A-I      intronic chr16:11069866(+) A-I      intronic chr16:11112459(+) A-I      intronic chr16:11107367(+) A-I      intronic chr16:11110428(+) A-I      intronic chr16:11209330(+) A-I      intronic chr16:11064443(+) A-I      intronic chr16:11137545(+) A-I      intronic chr16:11171000(+) A-I      intronic chr16:11216903(+) A-I      intronic chr16:11107208(+) A-I      intronic chr16:11203276(+) A-I      intronic chr16:11189676(+) A-I      intronic chr16:11107536(+) A-I      intronic chr16:11113470(+) A-I      intronic chr16:11171218(+) A-I      intronic chr16:11186019(+) A-I      intronic chr16:11115405(+) A-I      intronic chr16:11171209(+) A-I      intronic chr16:11067970(+) A-I      intronic chr16:11110383(+) A-I      intronic chr16:11171393(+) A-I      intronic chr16:11171249(+) A-I      intronic chr16:11055996(+) A-I      intronic chr16:11093860(+) A-I      intronic chr16:11087044(+) A-I      intronic chr16:11110467(+) A-I      intronic chr16:11203042(+) A-I      intronic chr16:11221544(+) A-I      intronic chr16:11202821(+) A-I      intronic chr16:11263406(+) A-I      intronic chr16:11052610(+) A-I      intronic chr16:11186286(+) A-I      intronic chr16:11112395(+) A-I      intronic chr16:11069907(+) A-I      intronic chr16:11107716(+) A-I      intronic chr16:11197236(+) A-I      intronic chr16:11221582(+) A-I      intronic chr16:11053678(+) A-I      intronic chr16:11110427(+) A-I      intronic chr16:11198246(+) A-I      intronic chr16:11149525(+) A-I      intronic chr16:11087109(+) A-I      intronic chr16:11110473(+) A-I      intronic chr16:11146920(+) A-I      intronic chr16:11110305(+) A-I      intronic chr16:11198188(+) A-I      intronic chr16:11107272(+) A-I      intronic chr16:11107285(+) A-I      intronic chr16:11197181(+) A-I      intronic chr16:11203172(+) A-I      intronic chr16:11069902(+) A-I      intronic chr16:11111931(+) A-I      intronic chr16:11236704(+) A-I      intronic chr16:11069052(+) A-I      intronic chr16:11209978(+) A-I      intronic chr16:11107591(+) A-I      intronic chr16:11236768(+) A-I      intronic chr16:11197357(+) A-I      intronic chr16:11171371(+) A-I      intronic chr16:11171072(+) A-I      intronic chr16:11198105(+) A-I      intronic chr16:11171113(+) A-I      intronic chr16:11158378(+) A-I      intronic chr16:11110347(+) A-I      intronic chr16:11079702(+) A-I      intronic chr16:11083147(+) A-I      intronic chr16:11186151(+) A-I      intronic chr16:11052611(+) A-I      intronic chr16:11069585(+) A-I      intronic chr16:11197182(+) A-I      intronic chr16:11203273(+) A-I      intronic chr16:11221684(+) A-I      intronic chr16:11263273(+) A-I      intronic chr16:11203039(+) A-I      intronic chr16:11110393(+) A-I      intronic chr16:11169315(+) A-I      intronic chr16:11169362(+) A-I      intronic chr16:11166027(+) A-I      intronic chr16:11223749(+) A-I      intronic chr16:11263167(+) A-I      intronic chr16:11263283(+) A-I      intronic chr16:11263237(+) A-I      intronic chr16:11263230(+) A-I      intronic chr16:11170947(+) A-I      intronic chr16:11171208(+) A-I      intronic chr16:11107717(+) A-I      intronic chr16:11163175(+) A-I      intronic chr16:11170946(+) A-I      intronic chr16:11236902(+) A-I      intronic chr16:11198030(+) A-I      intronic chr16:11198224(+) A-I      intronic chr16:11189815(+) A-I      intronic chr16:11171798(+) A-I      intronic chr16:11113506(+) A-I      intronic chr16:11056795(+) A-I      intronic chr16:11112491(+) A-I      intronic chr16:11185978(+) A-I      intronic chr16:11067529(+) A-I      intronic chr16:11263169(+) A-I      intronic chr16:11203201(+) A-I      intronic chr16:11163482(+) A-I      intronic chr16:11061305(+) A-I      intronic chr16:11110456(+) A-I      intronic chr16:11110270(+) A-I      intronic chr16:11061275(+) A-I      intronic chr16:11107494(+) A-I      intronic chr16:11110226(+) A-I      intronic chr16:11111932(+) A-I      intronic chr16:11189936(+) A-I      intronic chr16:11243629(+) A-I      intronic chr16:11107224(+) A-I      intronic chr16:11055992(+) A-I      intronic chr16:11133369(+) A-I      intronic chr16:11121985(+) A-I      intronic chr16:11197352(+) A-I      intronic chr16:11110237(+) A-I      intronic chr16:11110415(+) A-I      intronic chr16:11169406(+) A-I      intronic chr16:11107675(+) A-I      intronic chr16:11169568(+) A-I      intronic chr16:11111907(+) A-I      intronic chr16:11115472(+) A-I      intronic chr16:11221578(+) A-I      intronic chr16:11206377(+) A-I      intronic chr16:11112079(+) A-I      intronic chr16:11110306(+) A-I      intronic chr16:11112127(+) A-I      intronic chr16:11203115(+) A-I      intronic chr16:11107427(+) A-I      intronic chr16:11064450(+) A-I      intronic chr16:11077726(+) A-I      intronic chr16:11077800(+) A-I      intronic chr16:11266469(+) A-I      intronic chr16:11216878(+) A-I      intronic chr16:11186080(+) A-I      intronic chr16:11112147(+) A-I      intronic chr16:11111955(+) A-I      intronic chr16:11236943(+) A-I      intronic chr16:11110461(+) A-I      intronic chr16:11198069(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CLEC16A	chr16:11110461(+) A-I intron -    22327324 chr16:11121211(+) A-I intron -    22327324 chr16:11121609(+) A-I intron -    22327324 chr16:11171393(+) A-I intron -    22327324 chr16:11107208(+) A-I intron -    22028664 chr16:11107230(+) A-I intron -    22028664 chr16:11107231(+) A-I intron -    22028664 chr16:11107271(+) A-I intron -    22028664 chr16:11107272(+) A-I intron -    22028664 chr16:11107273(+) A-I intron -    22028664 chr16:11107285(+) A-I intron -    22028664 chr16:11107302(+) A-I intron -    22028664 chr16:11107310(+) A-I intron -    22028664 chr16:11107315(+) A-I intron -    22028664 chr16:11107360(+) A-I intron -    22028664 chr16:11107366(+) A-I intron -    22028664 chr16:11107375(+) A-I intron -    22028664 chr16:11107393(+) A-I intron -    22028664 chr16:11107397(+) A-I intron -    22028664 chr16:11113371(+) A-I intron -    21960545 chr16:11107208(+) A-G intron -    22484847 chr16:11110445(+) A-G intron -    22484847 chr16:11110461(+) A-G intron -    22484847 chr16:11113495(+) A-G intron -    22484847 chr16:11122058(+) C-A intron -    22484847 chr16:11171393(+) A-G intron -    22484847 chr16:11266674(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLEC16A	chr16:11038540-11038541(+) m6A 5'UTR       24284625//24981863 chr16:11096959-11096960(+) m6A CDS//exon       - chr16:11096969-11096970(+) m6A CDS//exon       24981863 chr16:11096994-11096995(+) m6A CDS//exon       24981863 chr16:11097028-11097029(+) m6A CDS//exon       25456834//24981863//22575960 chr16:11129931-11129932(+) m6A exon//intron       - chr16:11133669-11133670(+) m6A CDS//exon       - chr16:11217641-11217642(+) m6A CDS//exon       24981863 chr16:11217719-11217720(+) m6A CDS//exon       24284625//24981863 chr16:11219844-11219845(+) m6A CDS       24284625 chr16:11219884-11219885(+) m6A CDS//exon       - chr16:11219991-11219992(+) m6A CDS//exon       24284625 chr16:11260268-11260269(+) m6A CDS       24284625 chr16:11272210-11272211(+) m6A 3'UTR//CDS       24284625//24981863 chr16:11272266-11272267(+) m6A 3'UTR//CDS       24284625//25456834//24981863 chr16:11272310-11272311(+) m6A 3'UTR//CDS       24284625//25456834 chr16:11272374-11272375(+) m6A 3'UTR//CDS       24284625//25456834 chr16:11272542-11272543(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960 chr16:11272593-11272594(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11272617-11272618(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11272759-11272760(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:11272769-11272770(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:11272850-11272851(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:11272924-11272925(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr16:11272961-11272962(+) m6A 3'UTR       24284625//24981863//22608085 chr16:11272971-11272972(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr16:11273014-11273015(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr16:11273029-11273030(+) m6A 3'UTR       24981863 chr16:11273054-11273055(+) m6A 3'UTR       24981863 chr16:11273129-11273130(+) m6A 3'UTR       24981863 chr16:11273265-11273266(+) m6A 3'UTR       24209618//25456834//22608085 chr16:11273271-11273272(+) m6A 3'UTR       24209618//25456834//22608085 chr16:11273436-11273437(+) m6A 3'UTR       24981863//22608085 chr16:11273441-11273442(+) m6A 3'UTR       24981863 chr16:11273447-11273448(+) m6A 3'UTR       24284625//24981863 chr16:11273491-11273492(+) m6A 3'UTR       24284625//24981863 chr16:11273501-11273502(+) m6A 3'UTR       24284625 chr16:11273510-11273511(+) m6A 3'UTR       24284625 chr16:11273548-11273549(+) m6A 3'UTR       24284625 chr16:11273702-11273703(+) m6A 3'UTR       24284625//24981863 chr16:11273728-11273729(+) m6A 3'UTR       24284625//24981863 chr16:11273749-11273750(+) m6A 3'UTR       24284625//25456834//24981863 chr16:11273764-11273765(+) m6A 3'UTR       24284625//25456834//24981863 chr16:11273812-11273813(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr16:11273898-11273899(+) m6A 3'UTR       24284625//24981863 chr16:11273920-11273921(+) m6A 3'UTR       24284625//24981863 chr16:11274029-11274030(+) m6A 3'UTR       - chr16:11274107-11274108(+) m6A 3'UTR       24284625 chr16:11274146-11274147(+) m6A 3'UTR       24284625//22608085 chr16:11274216-11274217(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:11274272-11274273(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085 chr16:11274285-11274286(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085 chr16:11274357-11274358(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr16:11274375-11274376(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11274396-11274397(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11274500-11274501(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11274547-11274548(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11274595-11274596(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11274717-11274718(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11274734-11274735(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11274764-11274765(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11274782-11274783(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:11274906-11274907(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr16:11275025-11275026(+) m6A 3'UTR       24284625//25456834//24981863 chr16:11275088-11275089(+) m6A 3'UTR       24284625//25456834//24981863 chr16:11275112-11275113(+) m6A 3'UTR       24284625//25456834//24981863 chr16:11275126-11275127(+) m6A 3'UTR       24284625//25456834 chr16:11275131-11275132(+) m6A 3'UTR       24284625//25456834 chr16:11275249-11275250(+) m6A 3'UTR       24284625 chr16:11275377-11275378(+) m6A 3'UTR       24284625 chr16:11275385-11275386(+) m6A 3'UTR       24284625 chr16:11275614-11275615(+) m6A 3'UTR       24284625 chr16:11275871-11275872(+) m6A 3'UTR       24981863 chr16:11275886-11275887(+) m6A 3'UTR       24981863 chr16:11275910-11275911(+) m6A 3'UTR       25456834//24981863//22608085 chr16:11275967-11275968(+) m6A 3'UTR       25456834//24981863//22608085 chr16:11275987-11275988(+) m6A 3'UTR       25456834//24981863//22608085 chr16:11275993-11275994(+) m6A 3'UTR       25456834//24981863//22608085 chr16:11276011-11276012(+) m6A 3'UTR       25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	CLEC16A	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: CLEC16A

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg