Detail Information

Basic Information:


  VIRBase ID:  

VHID00668336

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:           PXMP4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-5p PXMP4
miRBase
Accession/Entrez ID		 MIMAT0009147 11264
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - PMP24

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PXMP4
chr20:32293936(-) A-I      3'UTR
chr20:32302159(-) A-I      intronic
chr20:32293964(-) A-I      3'UTR
chr20:32292802(-) A-I      3'UTR
chr20:32293969(-) A-I      3'UTR
chr20:32292810(-) A-I      3'UTR
chr20:32294210(-) A-I      3'UTR
chr20:32292812(-) A-I      3'UTR
chr20:32292813(-) A-I      3'UTR
chr20:32292817(-) A-I      3'UTR
chr20:32292819(-) A-I      3'UTR
chr20:32294823(-) A-I      3'UTR
chr20:32293920(-) A-I      3'UTR
chr20:32292818(-) A-I      3'UTR
chr20:32293107(-) A-I      3'UTR
chr20:32296960(-) A-I      intronic
chr20:32304872(-) A-I      intronic
chr20:32304862(-) A-I      intronic
chr20:32304840(-) A-I      intronic
chr20:32303388(-) A-I      intronic
chr20:32299691(-) A-I      intronic
chr20:32299684(-) A-I      intronic
chr20:32299431(-) A-I      intronic
chr20:32304901(-) A-I      intronic
chr20:32304902(-) A-I      intronic
chr20:32306884(-) A-I      intronic
chr20:32296605(-) A-I      intronic
chr20:32306974(-) A-I      intronic
chr20:32306975(-) A-I      intronic
chr20:32306981(-) A-I      intronic
chr20:32296573(-) A-I      intronic
chr20:32292963(-) A-I      3'UTR
chr20:32292964(-) A-I      3'UTR
chr20:32292966(-) A-I      3'UTR
chr20:32292969(-) A-I      3'UTR
chr20:32292978(-) A-I      3'UTR
chr20:32292989(-) A-I      3'UTR
chr20:32292990(-) A-I      3'UTR
chr20:32292991(-) A-I      3'UTR
chr20:32292997(-) A-I      3'UTR
chr20:32293000(-) A-I      3'UTR
chr20:32293009(-) A-I      3'UTR
chr20:32293023(-) A-I      3'UTR
chr20:32293028(-) A-I      3'UTR
chr20:32293052(-) A-I      3'UTR
chr20:32293203(-) A-I      3'UTR
chr20:32293226(-) A-I      3'UTR
chr20:32293349(-) A-I      3'UTR
chr20:32293354(-) A-I      3'UTR
chr20:32293405(-) A-I      3'UTR
chr20:32293409(-) A-I      3'UTR
chr20:32293746(-) A-I      3'UTR
chr20:32293747(-) A-I      3'UTR
chr20:32293749(-) A-I      3'UTR
chr20:32293797(-) A-I      3'UTR
chr20:32293892(-) A-I      3'UTR
chr20:32293896(-) A-I      3'UTR
chr20:32293908(-) A-I      3'UTR
chr20:32292975(-) A-I      3'UTR
chr20:32293911(-) A-I      3'UTR
chr20:32293925(-) A-I      3'UTR
chr20:32293935(-) A-I      3'UTR
chr20:32293945(-) A-I      3'UTR
chr20:32294132(-) A-I      3'UTR
chr20:32294139(-) A-I      3'UTR
chr20:32294147(-) A-I      3'UTR
chr20:32294154(-) A-I      3'UTR
chr20:32294177(-) A-I      3'UTR
chr20:32294765(-) A-I      3'UTR
chr20:32294771(-) A-I      3'UTR
chr20:32294781(-) A-I      3'UTR
chr20:32292816(-) A-I      3'UTR
chr20:32292814(-) A-I      3'UTR
chr20:32292832(-) A-I      3'UTR
chr20:32292835(-) A-I      3'UTR
chr20:32292837(-) A-I      3'UTR
chr20:32292917(-) A-I      3'UTR
chr20:32292928(-) A-I      3'UTR
chr20:32292940(-) A-I      3'UTR
chr20:32293959(-) A-I      3'UTR
chr20:32292952(-) A-I      3'UTR
chr20:32300341(-) A-I      intronic
chr20:32302133(-) A-I      intronic
chr20:32302145(-) A-I      intronic
chr20:32299416(-) A-I      intronic
chr20:32300863(-) A-I      intronic
chr20:32299625(-) A-I      intronic
chr20:32296435(-) A-I      intronic
chr20:32296953(-) A-I      intronic
chr20:32296451(-) A-I      intronic
chr20:32300612(-) A-I      intronic
chr20:32300384(-) A-I      intronic
chr20:32302083(-) A-I      intronic
chr20:32303931(-) A-I      intronic
chr20:32300849(-) A-I      intronic
chr20:32296130(-) A-I      intronic
chr20:32300690(-) A-I      intronic
chr20:32296031(-) A-I      intronic
chr20:32293804(-) A-I      3'UTR
chr20:32294958(-) A-I      3'UTR
chr20:32294004(-) A-I      3'UTR
chr20:32294800(-) A-I      3'UTR
chr20:32293285(-) A-I      3'UTR
chr20:32293218(-) A-I      3'UTR
chr20:32294005(-) A-I      3'UTR
chr20:32294201(-) A-I      3'UTR
chr20:32294119(-) A-I      3'UTR
chr20:32293178(-) A-I      3'UTR
chr20:32294176(-) A-I      3'UTR
chr20:32293789(-) A-I      3'UTR
chr20:32292944(-) A-I      3'UTR
chr20:32293162(-) A-I      3'UTR
chr20:32293068(-) A-I      3'UTR
chr20:32293928(-) A-I      3'UTR
chr20:32294918(-) A-I      3'UTR
chr20:32293151(-) A-I      3'UTR
chr20:32292924(-) A-I      3'UTR
chr20:32293295(-) A-I      3'UTR
chr20:32292874(-) A-I      3'UTR
chr20:32293182(-) A-I      3'UTR
chr20:32293240(-) A-I      3'UTR
chr20:32292806(-) A-I      3'UTR
chr20:32293364(-) A-I      3'UTR
chr20:32292854(-) A-I      3'UTR
chr20:32292831(-) A-I      3'UTR
chr20:32293860(-) A-I      3'UTR
chr20:32293927(-) A-I      3'UTR
chr20:32293014(-) A-I      3'UTR
chr20:32294153(-) A-I      3'UTR
chr20:32294868(-) A-I      3'UTR
chr20:32294141(-) A-I      3'UTR
chr20:32293163(-) A-I      3'UTR
chr20:32292960(-) A-I      3'UTR
chr20:32292933(-) A-I      3'UTR
chr20:32293870(-) A-I      3'UTR
chr20:32293063(-) A-I      3'UTR
chr20:32293792(-) A-I      3'UTR
chr20:32293385(-) A-I      3'UTR
chr20:32293243(-) A-I      3'UTR
chr20:32294805(-) A-I      3'UTR
chr20:32294923(-) A-I      3'UTR
chr20:32293744(-) A-I      3'UTR
chr20:32293373(-) A-I      3'UTR
chr20:32294942(-) A-I      3'UTR
chr20:32293135(-) A-I      3'UTR
chr20:32293999(-) A-I      3'UTR
chr20:32294187(-) A-I      3'UTR
chr20:32293970(-) A-I      3'UTR
chr20:32292856(-) A-I      3'UTR
chr20:32300353(-) A-I      intronic
chr20:32300504(-) A-I      intronic
chr20:32303844(-) A-I      intronic
chr20:32300610(-) A-I      intronic
chr20:32297097(-) A-I      intronic
chr20:32306840(-) A-I      intronic
chr20:32304815(-) A-I      intronic
chr20:32302262(-) A-I      intronic
chr20:32296171(-) A-I      intronic
chr20:32306127(-) A-I      intronic
chr20:32296095(-) A-I      intronic
chr20:32300569(-) A-I      intronic
chr20:32302243(-) A-I      intronic
chr20:32296612(-) A-I      intronic
chr20:32299430(-) A-I      intronic
chr20:32296991(-) A-I      intronic
chr20:32303014(-) A-I      intronic
chr20:32296225(-) A-I      intronic
chr20:32300601(-) A-I      intronic
chr20:32296952(-) A-I      intronic
chr20:32296635(-) A-I      intronic
chr20:32296172(-) A-I      intronic
chr20:32297017(-) A-I      intronic
chr20:32302242(-) A-I      intronic
chr20:32300526(-) A-I      intronic
chr20:32296085(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PXMP4
chr20:32292944(-) A-I exon 3'UTR    22327324
chr20:32294181(-) A-I exon 3'UTR    21960545   //22327324
chr20:32294201(-) A-I exon 3'UTR    22327324
chr20:32292831(-) A-I exon 3'UTR    21960545
chr20:32292856(-) A-I exon 3'UTR    21960545
chr20:32293792(-) A-I exon 3'UTR    21960545
chr20:32294141(-) A-I exon 3'UTR    21960545
chr20:32294180(-) A-I exon 3'UTR    21960545
chr20:32294187(-) A-I exon 3'UTR    21960545
chr20:32293554(-) A-I exon 3'UTR    21960545
chr20:32292856(-) A-G exon 3'UTR    22484847
chr20:32292924(-) A-G exon 3'UTR    22484847
chr20:32292934(-) A-G exon 3'UTR    22484847
chr20:32292944(-) A-G exon 3'UTR    22484847
chr20:32293373(-) A-G exon 3'UTR    22484847
chr20:32294119(-) A-G exon 3'UTR    22484847
chr20:32294141(-) A-G exon 3'UTR    22484847
chr20:32294153(-) A-G exon 3'UTR    22484847
chr20:32294180(-) A-G exon 3'UTR    22484847
chr20:32294181(-) A-G exon 3'UTR    22484847
chr20:32294201(-) A-G exon 3'UTR    22484847
chr20:32296085(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PXMP4
chr20:32294878-32294879(-) m6A 3'UTR       24981863
chr20:32294901-32294902(-) m6A 3'UTR       24981863
chr20:32295108-32295109(-) m6A 3'UTR       27773535
chr20:32295267-32295268(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr20:32295375-32295376(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr20:32295419-32295420(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr20:32295462-32295463(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr20:32295548-32295549(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr20:32295575-32295576(-) m6A 3'UTR//CDS       24284625//24981863//27773535
chr20:32295689-32295690(-) m6A 3'UTR//CDS       24284625//27773535
chr20:32295700-32295701(-) m6A 3'UTR//CDS       24284625//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-5p
Nucleus PML tissue     32324824
PXMP4
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HeLa-S3 cells|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-5p
Interactor2: PXMP4

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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