Basic Information:

  VIRBase ID:  

VHID00668093

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          ZBTB40:  NM_001330398     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	ZBTB40
miRBase Accession/Entrez ID	MIMAT0009147	9923
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ZNF923

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZBTB40	chr1:22817554(+) A-I      intronic chr1:22795413(+) A-I      intronic chr1:22794507(+) A-I      intronic chr1:22803995(+) A-I      intronic chr1:22804039(+) A-I      intronic chr1:22803990(+) A-I      intronic chr1:22817528(+) A-I      intronic chr1:22794502(+) A-I      intronic chr1:22794445(+) A-I      intronic chr1:22855297(+) A-I      3'UTR chr1:22794491(+) A-I      intronic chr1:22794405(+) A-I      intronic chr1:22794072(+) A-I      intronic chr1:22794539(+) A-I      intronic chr1:22802813(+) A-I      intronic chr1:22794048(+) A-I      intronic chr1:22794461(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZBTB40	chr1:22816686-22816687(+) m6A CDS       24284625//24981863//22608085 chr1:22816733-22816734(+) m6A CDS       24284625//24981863//22608085 chr1:22816793-22816794(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:22816846-22816847(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:22816860-22816861(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:22816963-22816964(+) m6A CDS       24284625//25456834//24981863//22608085 chr1:22817044-22817045(+) m6A CDS       24284625 chr1:22817056-22817057(+) m6A CDS       24284625 chr1:22828811-22828812(+) m6A CDS//intron       24981863 chr1:22828834-22828835(+) m6A CDS//intron       24981863 chr1:22828845-22828846(+) m6A CDS//intron       24981863 chr1:22838270-22838271(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr1:22838286-22838287(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr1:22838305-22838306(+) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr1:22838322-22838323(+) m6A CDS       24284625//25456834//24981863//22608085 chr1:22838354-22838355(+) m6A CDS       24284625//25456834//24981863//22608085 chr1:22838457-22838458(+) m6A CDS       24981863 chr1:22838485-22838486(+) m6A CDS       24981863 chr1:22838510-22838511(+) m6A CDS       24981863 chr1:22850808-22850809(+) m6A CDS       24284625 chr1:22850837-22850838(+) m6A CDS       24284625 chr1:22850907-22850908(+) m6A CDS       24284625 chr1:22852703-22852704(+) m6A CDS       24284625//22575960//22608085 chr1:22852751-22852752(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:22852842-22852843(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22853029-22853030(+) m6A 3'UTR       24284625//25456834 chr1:22853058-22853059(+) m6A 3'UTR       24284625 chr1:22853108-22853109(+) m6A 3'UTR       24284625//25456834//24981863 chr1:22853290-22853291(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22853362-22853363(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:22853373-22853374(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:22853491-22853492(+) m6A 3'UTR       24284625 chr1:22853550-22853551(+) m6A 3'UTR       24284625//24981863 chr1:22853604-22853605(+) m6A 3'UTR       24284625//24981863 chr1:22853624-22853625(+) m6A 3'UTR       24284625//24981863 chr1:22853761-22853762(+) m6A 3'UTR       24284625//24209618//24981863 chr1:22854420-22854421(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22854560-22854561(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22854583-22854584(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22854592-22854593(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22854665-22854666(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22854738-22854739(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22854874-22854875(+) m6A 3'UTR       24981863 chr1:22854879-22854880(+) m6A 3'UTR       24981863 chr1:22854929-22854930(+) m6A 3'UTR       24981863 chr1:22854948-22854949(+) m6A 3'UTR       24981863 chr1:22855250-22855251(+) m6A 3'UTR       24284625 chr1:22855306-22855307(+) m6A 3'UTR       24284625//24981863//22608085 chr1:22855343-22855344(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:22855360-22855361(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:22855413-22855414(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22855474-22855475(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22855612-22855613(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:22855666-22855667(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22855688-22855689(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:22855791-22855792(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:22855796-22855797(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:22855844-22855845(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:22855873-22855874(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:22855975-22855976(+) m6A 3'UTR       24284625//24981863 chr1:22855980-22855981(+) m6A 3'UTR       24284625//24981863 chr1:22856004-22856005(+) m6A 3'UTR       24284625 chr1:22856051-22856052(+) m6A 3'UTR       24284625 chr1:22856079-22856080(+) m6A 3'UTR       24284625 chr1:22856086-22856087(+) m6A 3'UTR       24284625 chr1:22856101-22856102(+) m6A 3'UTR       24284625 chr1:22856508-22856509(+) m6A 3'UTR       24284625//24981863 chr1:22856540-22856541(+) m6A 3'UTR       24284625//24981863 chr1:22856626-22856627(+) m6A 3'UTR       24284625 chr1:22856790-22856791(+) m6A 3'UTR       24284625//24981863//27773535 chr1:22856850-22856851(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:22856867-22856868(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:22856965-22856966(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:22857084-22857085(+) m6A 3'UTR       25456834//24981863//22608085 chr1:22857125-22857126(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	ZBTB40	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: ZBTB40

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg