Basic Information:

  VIRBase ID:  

VHID00667643

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          THRA:  NM_003250     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	THRA
miRBase Accession/Entrez ID	MIMAT0009147	7067
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AR7//c-ERBA-1//CHNG6//EAR7//ERB-T-1//ERBA//ERBA1//NR1A1//THRA1//THRA2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	THRA	chr17:38236420(+) A-I      intronic chr17:38241996(+) A-I      intronic chr17:38241540(+) A-I      intronic chr17:38238173(+) A-I      intronic chr17:38236110(+) A-I      intronic chr17:38238160(+) A-I      intronic chr17:38238161(+) A-I      intronic chr17:38238171(+) A-I      intronic chr17:38234721(+) A-I      intronic chr17:38235194(+) A-I      intronic chr17:38235627(+) A-I      intronic chr17:38235681(+) A-I      intronic chr17:38235257(+) A-I      intronic chr17:38234679(+) A-I      intronic chr17:38237666(+) A-I      intronic chr17:38236593(+) A-I      intronic chr17:38236573(+) A-I      intronic chr17:38237772(+) A-I      intronic chr17:38235703(+) A-I      intronic chr17:38237697(+) A-I      intronic chr17:38238723(+) A-I      intronic chr17:38237643(+) A-I      intronic chr17:38236200(+) A-I      intronic chr17:38237699(+) A-I      intronic chr17:38236144(+) A-I      intronic chr17:38236471(+) A-I      intronic chr17:38237056(+) A-I      intronic chr17:38236114(+) A-I      intronic chr17:38236240(+) A-I      intronic chr17:38239726(+) A-I      intronic chr17:38234659(+) A-I      intronic chr17:38236241(+) A-I      intronic chr17:38239371(+) A-I      intronic chr17:38234624(+) A-I      intronic chr17:38238787(+) A-I      intronic chr17:38236141(+) A-I      intronic chr17:38239120(+) A-I      intronic chr17:38236398(+) A-I      intronic chr17:38236643(+) A-I      intronic chr17:38237794(+) A-I      intronic chr17:38234062(+) A-I      intronic chr17:38239094(+) A-I      intronic chr17:38236191(+) A-I      intronic chr17:38236199(+) A-I      intronic chr17:38238079(+) A-I      intronic chr17:38235185(+) A-I      intronic chr17:38236277(+) A-I      intronic chr17:38236158(+) A-I      intronic chr17:38238665(+) A-I      intronic chr17:38235603(+) A-I      intronic chr17:38236259(+) A-I      intronic chr17:38242254(+) A-I      intronic chr17:38234588(+) A-I      intronic chr17:38242284(+) A-I      intronic chr17:38237701(+) A-I      intronic chr17:38236610(+) A-I      intronic chr17:38242352(+) A-I      intronic chr17:38234545(+) A-I      intronic chr17:38239335(+) A-I      intronic chr17:38234031(+) A-I      intronic chr17:38236411(+) A-I      intronic chr17:38241517(+) A-I      intronic chr17:38236564(+) A-I      intronic chr17:38236551(+) A-I      intronic chr17:38235245(+) A-I      intronic chr17:38235600(+) A-I      intronic chr17:38234474(+) A-I      intronic chr17:38235580(+) A-I      intronic chr17:38242200(+) A-I      intronic chr17:38235604(+) A-I      intronic chr17:38238666(+) A-I      intronic chr17:38242218(+) A-I      intronic chr17:38241822(+) A-I      intronic chr17:38241997(+) A-I      intronic chr17:38235041(+) A-I      intronic chr17:38234680(+) A-I      intronic chr17:38241726(+) A-I      intronic chr17:38236142(+) A-I      intronic chr17:38235085(+) A-I      intronic chr17:38242285(+) A-I      intronic chr17:38236002(+) A-I      intronic chr17:38236578(+) A-I      intronic chr17:38236134(+) A-I      intronic chr17:38239649(+) A-I      intronic chr17:38234433(+) A-I      intronic chr17:38236645(+) A-I      intronic chr17:38236183(+) A-I      intronic chr17:38239071(+) A-I      intronic chr17:38236493(+) A-I      intronic chr17:38237759(+) A-I      intronic chr17:38235994(+) A-I      intronic chr17:38237578(+) A-I      intronic chr17:38237962(+) A-I      intronic chr17:38236155(+) A-I      intronic chr17:38234368(+) A-I      intronic chr17:38238672(+) A-I      intronic chr17:38236419(+) A-I      intronic chr17:38239310(+) A-I      intronic chr17:38237694(+) A-I      intronic chr17:38235985(+) A-I      intronic chr17:38236874(+) A-I      intronic chr17:38234631(+) A-I      intronic chr17:38237961(+) A-I      intronic chr17:38234386(+) A-I      intronic chr17:38237755(+) A-I      intronic chr17:38236044(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	THRA	chr17:38219301-38219302(+) m6A 5'UTR//intron       24209618//24981863 chr17:38228388-38228389(+) m6A 5'UTR//intron       - chr17:38230454-38230455(+) m6A 5'UTR       - chr17:38230459-38230460(+) m6A 5'UTR       - chr17:38230464-38230465(+) m6A 5'UTR       - chr17:38230498-38230499(+) m6A 5'UTR       - chr17:38230506-38230507(+) m6A 5'UTR       - chr17:38230746-38230747(+) m6A CDS       24209618//24981863 chr17:38230778-38230779(+) m6A CDS       24209618//24981863 chr17:38230790-38230791(+) m6A CDS       24209618//24981863 chr17:38240232-38240233(+) m6A CDS       24284625 chr17:38245482-38245483(+) m6A CDS       24284625 chr17:38245484-38245485(+) Am CDS       - chr17:38245546-38245547(+) m6A CDS       24284625//24981863 chr17:38245660-38245661(+) m6A CDS//intron       24284625//24209618//25456834//24981863 chr17:38245788-38245789(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960 chr17:38245877-38245878(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38245892-38245893(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38245901-38245902(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38245909-38245910(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38245925-38245926(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38245968-38245969(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:38246016-38246017(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960 chr17:38246246-38246247(+) m6A 3'UTR//intron       24981863 chr17:38246264-38246265(+) m6A 3'UTR//intron       24981863 chr17:38246278-38246279(+) m6A 3'UTR//intron       24981863 chr17:38246283-38246284(+) m6A 3'UTR//intron       24981863 chr17:38246368-38246369(+) m6A 3'UTR//intron       24981863 chr17:38246739-38246740(+) m6A 3'UTR//intron       24284625 chr17:38247272-38247273(+) m6A 3'UTR//intron       24209618 chr17:38247281-38247282(+) m6A 3'UTR//intron       24209618 chr17:38247332-38247333(+) m6A 3'UTR//intron       24209618 chr17:38247442-38247443(+) m6A 3'UTR//intron       - chr17:38247526-38247527(+) m6A 3'UTR//intron       - chr17:38247877-38247878(+) m6A 3'UTR//intron       24209618 chr17:38247978-38247979(+) m6A 3'UTR//intron       24284625 chr17:38248316-38248317(+) m6A 3'UTR//intron       24209618//24981863 chr17:38248435-38248436(+) m6A 3'UTR//intron       24981863 chr17:38248524-38248525(+) m6A 3'UTR//intron       24981863 chr17:38248657-38248658(+) m6A 3'UTR//intron       24209618 chr17:38249564-38249565(+) m6A CDS       24284625//25456834//24981863//22608085 chr17:38249589-38249590(+) m6A CDS       24284625//25456834//24981863//22608085 chr17:38249606-38249607(+) m6A CDS       24284625//25456834//24981863//22608085 chr17:38249767-38249768(+) m6A 3'UTR       24284625 chr17:38249794-38249795(+) m6A 3'UTR       24284625 chr17:38249804-38249805(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	THRA	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: THRA

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg