Detail Information

Basic Information:


  VIRBase ID:  

VHID00667081

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:           KCNMA1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol jcv-miR-J1-5p KCNMA1
miRBase
Accession/Entrez ID		 MIMAT0009147 3778
Organism JC polyomavirus (JCPyV) Homo sapiens
Category miRNA mRNA
Alias - bA205K10.1//BKTM//CADEDS//hSlo//IEG16//KCa1.1//LIWAS//MaxiK//mSLO1//PNKD3//SAKCA//SLO//SLO-ALPHA//SLO1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KCNMA1
chr10:79269332(-) A-I      intronic
chr10:79269333(-) A-I      intronic
chr10:79269334(-) A-I      intronic
chr10:79269353(-) A-I      intronic
chr10:78841908(-) A-I      intronic
chr10:79268136(-) A-I      intronic
chr10:79268141(-) A-I      intronic
chr10:79268170(-) A-I      intronic
chr10:79269356(-) A-I      intronic
chr10:79268138(-) A-I      intronic
chr10:79269706(-) A-I      intronic
chr10:79269738(-) A-I      intronic
chr10:78911031(-) A-I      intronic
chr10:78744033(-) A-I      intronic
chr10:78911212(-) A-I      intronic
chr10:79197863(-) A-I      intronic
chr10:79312695(-) A-I      intronic
chr10:79208762(-) A-I      intronic
chr10:78911213(-) A-I      intronic
chr10:79269118(-) A-I      intronic
chr10:79354919(-) A-I      intronic
chr10:79339928(-) A-I      intronic
chr10:79208748(-) A-I      intronic
chr10:78911077(-) A-I      intronic
chr10:79268048(-) A-I      intronic
chr10:78911174(-) A-I      intronic
chr10:79355517(-) A-I      intronic
chr10:79366224(-) A-I      intronic
chr10:78841919(-) A-I      intronic
chr10:78911045(-) A-I      intronic
chr10:79367998(-) A-I      intronic
chr10:79269033(-) A-I      intronic
chr10:79316097(-) A-I      intronic
chr10:78744037(-) A-I      intronic
chr10:78911219(-) A-I      intronic
chr10:78911042(-) A-I      intronic
chr10:79264470(-) A-I      intronic
chr10:79366360(-) A-I      intronic
chr10:78911087(-) A-I      intronic
chr10:78842035(-) A-I      intronic
chr10:78841854(-) A-I      intronic
chr10:79355528(-) A-I      intronic
chr10:79142540(-) A-I      intronic
chr10:79269014(-) A-I      intronic
chr10:79332431(-) A-I      intronic
chr10:78913227(-) A-I      intronic
chr10:79208733(-) A-I      intronic
chr10:78927714(-) A-I      intronic
chr10:78877090(-) A-I      intronic
chr10:79355535(-) A-I      intronic
chr10:79147603(-) A-I      intronic
chr10:78911016(-) A-I      intronic
chr10:79354907(-) A-I      intronic
chr10:78877224(-) A-I      intronic
chr10:79147487(-) A-I      intronic
chr10:78976987(-) A-I      intronic
chr10:78843587(-) A-I      intronic
chr10:79030337(-) A-I      intronic
chr10:79147438(-) A-I      intronic
chr10:78843560(-) A-I      intronic
chr10:78927727(-) A-I      intronic
chr10:78743305(-) A-I      intronic
chr10:79355545(-) A-I      intronic
chr10:78841990(-) A-I      intronic
chr10:78841981(-) A-I      intronic
chr10:79355680(-) A-I      intronic
chr10:78929351(-) A-I      intronic
chr10:78841915(-) A-I      intronic
chr10:79368091(-) A-I      intronic
chr10:78841902(-) A-I      intronic
chr10:79381434(-) A-I      intronic
chr10:78841898(-) A-I      intronic
chr10:78929849(-) A-I      intronic
chr10:78744028(-) A-I      intronic
chr10:78841863(-) A-I      intronic
chr10:78929886(-) A-I      intronic
chr10:78937275(-) A-I      intronic
chr10:78841825(-) A-I      intronic
chr10:78799917(-) A-I      intronic
chr10:78843421(-) A-I      intronic
chr10:78799890(-) A-I      intronic
chr10:78927512(-) A-I      intronic
chr10:78744056(-) A-I      intronic
chr10:78799875(-) A-I      intronic
chr10:79197908(-) A-I      intronic
chr10:78799642(-) A-I      intronic
chr10:78799636(-) A-I      intronic
chr10:78744066(-) A-I      intronic
chr10:78982935(-) A-I      intronic
chr10:78982900(-) A-I      intronic
chr10:79270434(-) A-I      intronic
chr10:78843541(-) A-I      intronic
chr10:78744029(-) A-I      intronic
chr10:78699150(-) A-I      intronic
chr10:78699142(-) A-I      intronic
chr10:78698990(-) A-I      intronic
chr10:79143582(-) A-I      intronic
chr10:78698984(-) A-I      intronic
chr10:78911179(-) A-I      intronic
chr10:79327678(-) A-I      intronic
chr10:79333693(-) A-I      intronic
chr10:79397298(-) A-I      NonSyn:Ser->Gly
chr10:79314292(-) A-I      intronic
chr10:79333701(-) A-I      intronic
chr10:78938220(-) A-I      intronic
chr10:79330620(-) A-I      intronic
chr10:78841951(-) A-I      intronic
chr10:78744141(-) A-I      intronic
chr10:78743322(-) A-I      intronic
chr10:79170942(-) A-I      intronic
chr10:78911280(-) A-I      intronic
chr10:79316180(-) A-I      intronic
chr10:79268061(-) A-I      intronic
chr10:79364393(-) A-I      intronic
chr10:78841980(-) A-I      intronic
chr10:79333717(-) A-I      intronic
chr10:79333698(-) A-I      intronic
chr10:79220607(-) A-I      intronic
chr10:78897574(-) A-I      intronic
chr10:79300596(-) A-I      intronic
chr10:79316045(-) A-I      intronic
chr10:79366354(-) A-I      intronic
chr10:78897570(-) A-I      intronic
chr10:79367977(-) A-I      intronic
chr10:79332257(-) A-I      intronic
chr10:79093041(-) A-I      intronic
chr10:79355551(-) A-I      intronic
chr10:78929226(-) A-I      intronic
chr10:79249245(-) A-I      intronic
chr10:79198295(-) A-I      intronic
chr10:79268057(-) A-I      intronic
chr10:79316135(-) A-I      intronic
chr10:79264466(-) A-I      intronic
chr10:78744221(-) A-I      intronic
chr10:79312685(-) A-I      intronic
chr10:79143605(-) A-I      intronic
chr10:78929334(-) A-I      intronic
chr10:79001459(-) A-I      intronic
chr10:78793939(-) A-I      intronic
chr10:78911081(-) A-I      intronic
chr10:79142589(-) A-I      intronic
chr10:78843533(-) A-I      intronic
chr10:78887551(-) A-I      intronic
chr10:78915741(-) A-I      intronic
chr10:79360262(-) A-I      intronic
chr10:78793880(-) A-I      intronic
chr10:79143602(-) A-I      intronic
chr10:78743303(-) A-I      intronic
chr10:79366252(-) A-I      intronic
chr10:79030403(-) A-I      intronic
chr10:79256110(-) A-I      intronic
chr10:78743318(-) A-I      intronic
chr10:79360483(-) A-I      intronic
chr10:79314298(-) A-I      intronic
chr10:78959981(-) A-I      intronic
chr10:79147569(-) A-I      intronic
chr10:78804285(-) A-I      intronic
chr10:79368028(-) A-I      intronic
chr10:78937272(-) A-I      intronic
chr10:78843424(-) A-I      intronic
chr10:79142584(-) A-I      intronic
chr10:79147595(-) A-I      intronic
chr10:79339883(-) A-I      intronic
chr10:79332457(-) A-I      intronic
chr10:79147473(-) A-I      intronic
chr10:78959982(-) A-I      intronic
chr10:78842057(-) A-I      intronic
chr10:79316100(-) A-I      intronic
chr10:78887548(-) A-I      intronic
chr10:78906338(-) A-I      intronic
chr10:79191543(-) A-I      intronic
chr10:79197955(-) A-I      intronic
chr10:78976935(-) A-I      intronic
chr10:78897693(-) A-I      intronic
chr10:78843415(-) A-I      intronic
chr10:78841855(-) A-I      intronic
chr10:79091504(-) A-I      intronic
chr10:78877102(-) A-I      intronic
chr10:78841924(-) A-I      intronic
chr10:78897699(-) A-I      intronic
chr10:78743273(-) A-I      intronic
chr10:78963598(-) A-I      intronic
chr10:79354847(-) A-I      intronic
chr10:78843373(-) A-I      intronic
chr10:78744081(-) A-I      intronic
chr10:79354899(-) A-I      intronic
chr10:79330627(-) A-I      intronic
chr10:79143563(-) A-I      intronic
chr10:78841911(-) A-I      intronic
chr10:79158515(-) A-I      intronic
chr10:79270010(-) A-I      intronic
chr10:79270027(-) A-I      intronic
chr10:78842058(-) A-I      intronic
chr10:79158524(-) A-I      intronic
chr10:79154739(-) A-I      intronic
chr10:78989596(-) A-I      intronic
chr10:79333727(-) A-I      intronic
chr10:78979488(-) A-I      intronic
chr10:79228436(-) A-I      intronic
chr10:79154740(-) A-I      intronic
chr10:79249063(-) A-I      intronic
chr10:79358001(-) A-I      intronic
chr10:78929360(-) A-I      intronic
chr10:79269682(-) A-I      intronic
chr10:79269713(-) A-I      intronic
chr10:79264207(-) A-I      intronic
chr10:79052444(-) A-I      intronic
chr10:79270000(-) A-I      intronic
chr10:79287368(-) A-I      intronic
chr10:79269714(-) A-I      intronic
chr10:79398130(-) A-I      5'UTR
chr10:79269995(-) A-I      intronic
chr10:78991955(-) A-I      intronic
chr10:78989599(-) A-I      intronic
chr10:78991943(-) A-I      intronic
chr10:79162866(-) A-I      intronic
chr10:78829927(-) A-I      intronic
chr10:79248412(-) A-I      intronic
chr10:79316580(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KCNMA1
chr10:79317546(-) A-I intron -    15342557
chr10:79317552(-) A-I intron -    15342557
chr10:79317587(-) A-I intron -    15342557
chr10:79317590(-) A-I intron -    15342557
chr10:79317601(-) A-I intron -    15342557
chr10:79318095(-) A-I intron -    15342557
chr10:79318855(-) A-I intron -    15342557
chr10:79397298(-) A-I exon CDS    19478186
chr10:78744081(-) A-G intron -    22484847
chr10:78744141(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KCNMA1
chr10:78645839-78645840(-) m6A 3'UTR//intron       -
chr10:78645930-78645931(-) m6A 3'UTR//intron       -
chr10:78646761-78646762(-) m6A 3'UTR//intron       24981863
chr10:78646814-78646815(-) m6A 3'UTR//intron       24981863
chr10:78646846-78646847(-) m6A 3'UTR//intron       24981863
chr10:78646995-78646996(-) m6A 3'UTR//intron       24981863
chr10:78647057-78647058(-) m6A CDS       24981863
chr10:78647084-78647085(-) m6A CDS       24981863
chr10:78647093-78647094(-) m6A CDS       24981863
chr10:78647225-78647226(-) m6A CDS//exon       -
chr10:79396313-79396314(-) m6A 3'UTR//intron       25456834
chr10:79397054-79397055(-) m6A CDS       25456834
chr10:79397305-79397306(-) m6A CDS       24209618//24981863
chr10:79398025-79398026(-) m6A 5'UTR       25456834//24981863
chr10:79398070-79398071(-) m6A 5'UTR       24209618//25456834//24981863
chr10:79398087-79398088(-) m6A 5'UTR       24209618//25456834//24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate jcv-miR-J1-5p
Nucleus PML tissue     32324824
KCNMA1
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: jcv-miR-J1-5p
Interactor2: KCNMA1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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