Basic Information:

  VIRBase ID:  

VHID00666880

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          FKTN:  NR_147214     

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Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	FKTN
miRBase Accession/Entrez ID	MIMAT0009147	2218
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CMD1X//FCMD//LGMD2M//LGMDR13//MDDGA4//MDDGB4//MDDGC4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FKTN	chr9:108380145(+) A-I      intronic chr9:108344496(+) A-I      intronic chr9:108336653(+) A-I      intronic chr9:108336660(+) A-I      intronic chr9:108336667(+) A-I      intronic chr9:108386922(+) A-I      intronic chr9:108396444(+) A-I      intronic chr9:108321708(+) A-I      intronic chr9:108386837(+) A-I      intronic chr9:108335892(+) A-I      intronic chr9:108375135(+) A-I      intronic chr9:108375119(+) A-I      intronic chr9:108377245(+) A-I      intronic chr9:108375171(+) A-I      intronic chr9:108377337(+) A-I      intronic chr9:108386801(+) A-I      intronic chr9:108396513(+) A-I      intronic chr9:108377330(+) A-I      intronic chr9:108402822(+) A-I      3'UTR chr9:108402687(+) A-I      3'UTR chr9:108402711(+) A-I      3'UTR chr9:108320821(+) A-I      intronic chr9:108320809(+) A-I      intronic chr9:108377229(+) A-I      intronic chr9:108386887(+) A-I      intronic chr9:108320808(+) A-I      intronic chr9:108323115(+) A-I      intronic chr9:108335893(+) A-I      intronic chr9:108323114(+) A-I      intronic chr9:108396615(+) A-I      intronic chr9:108377244(+) A-I      intronic chr9:108389467(+) A-I      intronic chr9:108375154(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FKTN	chr9:108390892(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FKTN	chr9:108335946-108335947(+) m6A 5'UTR//exon//intron       24981863 chr9:108335965-108335966(+) m6A 5'UTR//exon//intron       24981863 chr9:108336485-108336486(+) m6A exon//intron       24981863 chr9:108336492-108336493(+) m6A exon//intron       24981863 chr9:108382289-108382290(+) m6A 3'UTR//CDS       24981863 chr9:108382325-108382326(+) m6A 3'UTR//CDS       24981863 chr9:108397362-108397363(+) m6A 3'UTR//CDS       24284625//24981863//22608085 chr9:108397375-108397376(+) m6A 3'UTR//CDS       24284625//24981863//22608085 chr9:108397401-108397402(+) m6A 3'UTR//CDS       24284625//24981863//22608085 chr9:108397434-108397435(+) m6A 3'UTR//CDS//intron       24284625//24981863//22608085 chr9:108397462-108397463(+) m6A 3'UTR//CDS//intron       24284625//24981863//22608085 chr9:108397626-108397627(+) m6A 3'UTR//intron       24209618//24981863//22608085 chr9:108397638-108397639(+) m6A 3'UTR//intron       24209618//24981863//22608085 chr9:108397667-108397668(+) m6A 3'UTR//intron       24209618//24981863//22608085 chr9:108397770-108397771(+) m6A 3'UTR//intron       24981863//22608085 chr9:108397806-108397807(+) m6A 3'UTR//intron       24981863//22608085 chr9:108397830-108397831(+) m6A 3'UTR//intron       24981863 chr9:108397896-108397897(+) m6A 3'UTR//intron       24981863 chr9:108399472-108399473(+) Y 3'UTR//intron       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	FKTN	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: FKTN

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg