Basic Information:

  VIRBase ID:  

VHID00666665

  Virus:  

JC polyomavirus (JCPyV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      jcv-miR-J1-5p:  MIMAT0009147          CD4:  NM_001195017     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	jcv-miR-J1-5p	CD4
miRBase Accession/Entrez ID	MIMAT0009147	920
Organism	JC polyomavirus (JCPyV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD4mut

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CD4	chr12:6913829(+) A-I      intronic chr12:6913824(+) A-I      intronic chr12:6914067(+) A-I      intronic chr12:6913994(+) A-I      intronic chr12:6913933(+) A-I      intronic chr12:6913874(+) A-I      intronic chr12:6913861(+) A-I      intronic chr12:6913853(+) A-I      intronic chr12:6922032(+) A-I      intronic chr12:6900950(+) A-I      intronic chr12:6912458(+) A-I      intronic chr12:6917125(+) A-I      intronic chr12:6912074(+) A-I      intronic chr12:6915494(+) A-I      intronic chr12:6912102(+) A-I      intronic chr12:6912065(+) A-I      intronic chr12:6915279(+) A-I      intronic chr12:6912107(+) A-I      intronic chr12:6912824(+) A-I      intronic chr12:6912831(+) A-I      intronic chr12:6913806(+) A-I      intronic chr12:6921725(+) A-I      intronic chr12:6922135(+) A-I      intronic chr12:6922033(+) A-I      intronic chr12:6911220(+) A-I      intronic chr12:6910315(+) A-I      intronic chr12:6915210(+) A-I      intronic chr12:6911223(+) A-I      intronic chr12:6914571(+) A-I      intronic chr12:6900509(+) A-I      intronic chr12:6915095(+) A-I      intronic chr12:6914276(+) A-I      intronic chr12:6900883(+) A-I      intronic chr12:6914308(+) A-I      intronic chr12:6915236(+) A-I      intronic chr12:6915096(+) A-I      intronic chr12:6911587(+) A-I      intronic chr12:6913857(+) A-I      intronic chr12:6912160(+) A-I      intronic chr12:6900788(+) A-I      intronic chr12:6900792(+) A-I      intronic chr12:6912372(+) A-I      intronic chr12:6922053(+) A-I      intronic chr12:6910172(+) A-I      intronic chr12:6910015(+) A-I      intronic chr12:6912391(+) A-I      intronic chr12:6915624(+) A-I      intronic chr12:6915483(+) A-I      intronic chr12:6914035(+) A-I      intronic chr12:6912497(+) A-I      intronic chr12:6913089(+) A-I      intronic chr12:6911242(+) A-I      intronic chr12:6922143(+) A-I      intronic chr12:6900806(+) A-I      intronic chr12:6912515(+) A-I      intronic chr12:6913877(+) A-I      intronic chr12:6921387(+) A-I      intronic chr12:6914306(+) A-I      intronic chr12:6912396(+) A-I      intronic chr12:6910272(+) A-I      intronic chr12:6912500(+) A-I      intronic chr12:6913971(+) A-I      intronic chr12:6910146(+) A-I      intronic chr12:6911648(+) A-I      intronic chr12:6916065(+) A-I      intronic chr12:6900683(+) A-I      intronic chr12:6914567(+) A-I      intronic chr12:6913995(+) A-I      intronic chr12:6900968(+) A-I      intronic chr12:6911657(+) A-I      intronic chr12:6914582(+) A-I      intronic chr12:6921351(+) A-I      intronic chr12:6900848(+) A-I      intronic chr12:6911702(+) A-I      intronic chr12:6914545(+) A-I      intronic chr12:6912456(+) A-I      intronic chr12:6915492(+) A-I      intronic chr12:6915665(+) A-I      intronic chr12:6914579(+) A-I      intronic chr12:6922160(+) A-I      intronic chr12:6910346(+) A-I      intronic chr12:6914235(+) A-I      intronic chr12:6913878(+) A-I      intronic chr12:6900797(+) A-I      intronic chr12:6914543(+) A-I      intronic chr12:6911924(+) A-I      intronic chr12:6921356(+) A-I      intronic chr12:6913090(+) A-I      intronic chr12:6917032(+) A-I      intronic chr12:6914491(+) A-I      intronic chr12:6910165(+) A-I      intronic chr12:6912589(+) A-I      intronic chr12:6913823(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CD4	chr12:6920879(+) T-C intron -    22484847 chr12:6920889(+) G-A intron -    22484847 chr12:6920911(+) C-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CD4	chr12:6898726-6898727(+) m6A 5'UTR//exon       - chr12:6923614-6923615(+) m6A exon//intron       - chr12:6923714-6923715(+) m6A exon//intron       - chr12:6923774-6923775(+) m6A exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	jcv-miR-J1-5p	Nucleus PML tissue     32324824
	CD4	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: jcv-miR-J1-5p
Interactor2: CD4

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg